RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 DPPA4Q7L190 304 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 EFL1Q7Z2Z2 1120 aaKnown RBP12.81□□□□□ -0.36
PTPRF-214ENST00000496043 RD3Q7Z3Z2 195 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 NUDCD1Q96RS6 583 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 LRRC61Q9BV99 259 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 BOCQ9BWV1 1114 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 CLPBQ9H078 707 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 KCTD5Q9NXV2 234 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 CTTNBP2NLQ9P2B4 639 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 RCOR3Q9P2K3 495 aaPredicted RBP12.81□□□□□ -0.36
PTPRF-214ENST00000496043 PNMA8BQ9ULN7 279 aaPredicted RBP12.81□□□□□ -0.36
PTPRF-214ENST00000496043 PCDHGC4Q9Y5F7 938 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 TTC24A2A3L6 582 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-214ENST00000496043 A8MX80 341 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 CACNB4O00305 520 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-214ENST00000496043 RRP8O43159 456 aaKnown RBP12.8□□□□□ -0.36
PTPRF-214ENST00000496043 CBFA2T2O43439 604 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 HTRA2O43464 458 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-214ENST00000496043 SOCS5O75159 536 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 PEX11BO96011 259 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 HOXC4P09017 264 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-214ENST00000496043 H2AFZP0C0S5 128 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 ELFN1P0C7U0 828 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 CR2P20023 1033 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 IL4RP24394 825 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 ACTN2P35609 894 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 SLC25A11Q02978 314 aaKnown RBP12.8□□□□□ -0.36
PTPRF-214ENST00000496043 ACOX1Q15067 660 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 RALGPS1Q5JS13 557 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 C6orf132Q5T0Z8 1188 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 GUSBP11Q6P575 273 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 H2AFVQ71UI9 128 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 GKN2Q86XP6 184 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 MAP7D3Q8IWC1 876 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 LSMEM2Q8N112 164 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 ATPAF2Q8N5M1 289 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 KCTD6Q8NC69 237 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 OR8K1Q8NGG5 319 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 ZNF564Q8TBZ8 553 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-214ENST00000496043 FAM71BQ8TC56 605 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 PDCD6IPQ8WUM4 868 aaKnown RBP12.8□□□□□ -0.36
PTPRF-214ENST00000496043 SPOCK2Q92563 424 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 FGF11Q92914 225 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 NAT6Q93015 286 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 NSMCE3Q96MG7 304 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 WDR92Q96MX6 357 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 DCBLD2Q96PD2 775 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 XPO4Q9C0E2 1151 aaKnown RBP12.8□□□□□ -0.36
PTPRF-214ENST00000496043 NOD2Q9HC29 1040 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 ZNHIT6Q9NWK9 470 aaKnown RBP12.8□□□□□ -0.36
PTPRF-214ENST00000496043 GULP1Q9UBP9 304 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 KLQ9UEF7 1012 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 LCMT1Q9UIC8 334 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 PADI4Q9UM07 663 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 PHTF1Q9UMS5 762 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 OR1A2Q9Y585 309 aa12.8□□□□□ -0.36
PTPRF-214ENST00000496043 ASPMQ8IZT6 3477 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 CSO75390 466 aaKnown RBP12.79□□□□□ -0.36
PTPRF-214ENST00000496043 CYP2A6P11509 494 aaPredicted RBP12.79□□□□□ -0.36
PTPRF-214ENST00000496043 TGM2P21980 687 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 KELP23276 732 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 TRIM23P36406 574 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 EIF2S3P41091 472 aaKnown RBP12.79□□□□□ -0.36
PTPRF-214ENST00000496043 MMP13P45452 471 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 RALGDSQ12967 914 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 MMRN1Q13201 1228 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 PDK2Q15119 407 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 ALG11Q2TAA5 492 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 ATP13A4Q4VNC1 1196 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 PDZD3Q86UT5 571 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 SLC35F3Q8IY50 421 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 PGBD5Q8N414 524 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 PLA2G15Q8NCC3 412 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 WDR48Q8TAF3 677 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 CTNNBL1Q8WYA6 563 aaPredicted RBP12.79□□□□□ -0.36
PTPRF-214ENST00000496043 GRAMD1AQ96CP6 724 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 MGME1Q9BQP7 344 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 UVRAGQ9P2Y5 699 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 B4GALT6Q9UBX8 382 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 PCDHB1Q9Y5F3 818 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 ACACAQ13085 2346 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 SPEGQ15772 3267 aa12.79□□□□□ -0.36
PTPRF-214ENST00000496043 CHD6Q8TD26 2715 aa12.78□□□□□ -0.36
PTPRF-214ENST00000496043 PDE2AO00408 941 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-214ENST00000496043 TNFRSF10CO14798 259 aa12.78□□□□□ -0.36
PTPRF-214ENST00000496043 TLX3O43711 291 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-214ENST00000496043 BRINP1O60477 761 aa12.78□□□□□ -0.36
PTPRF-214ENST00000496043 USP12O75317 370 aa12.78□□□□□ -0.36
PTPRF-214ENST00000496043 PROSCO94903 275 aa12.78□□□□□ -0.36
PTPRF-214ENST00000496043 CPP00450 1065 aa12.78□□□□□ -0.36
PTPRF-214ENST00000496043 KRT7P08729 469 aa12.78□□□□□ -0.36
PTPRF-214ENST00000496043 KRT10P13645 584 aa12.78□□□□□ -0.36
PTPRF-214ENST00000496043 CES1P23141 567 aa12.78□□□□□ -0.36
PTPRF-214ENST00000496043 VIPR1P32241 457 aa12.78□□□□□ -0.36
PTPRF-214ENST00000496043 LSSP48449 732 aa12.78□□□□□ -0.36
PTPRF-214ENST00000496043 ARSEP51690 589 aa12.78□□□□□ -0.36
PTPRF-214ENST00000496043 KIAA1024LP59773 190 aa12.78□□□□□ -0.36
PTPRF-214ENST00000496043 ITKQ08881 620 aa12.78□□□□□ -0.36
PTPRF-214ENST00000496043 TRIM14Q14142 442 aa12.78□□□□□ -0.36
PTPRF-214ENST00000496043 PAFAH1B3Q15102 231 aaKnown RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms