RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-208ENST00000494728 HIC2Q96JB3 615 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 ZNF641Q96N77 438 aaPredicted RBP11.71□□□□□ -0.53
VTI1A-208ENST00000494728 CSPG4P5Q96PW8 444 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 DEPDC7Q96QD5 511 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 SMIM14Q96QK8 99 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 PSKH2Q96QS6 385 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 TUBGCP5Q96RT8 1024 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 EIF3CQ99613 913 aaKnown RBP11.71□□□□□ -0.53
VTI1A-208ENST00000494728 APOOQ9BUR5 198 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 C1QTNF7Q9BXJ2 289 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 PRORYQ9H606 182 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 ATP13A3Q9H7F0 1226 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 ZWILCHQ9H900 591 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 USP29Q9HBJ7 922 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 PCDH18Q9HCL0 1135 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 MRPL40Q9NQ50 206 aaKnown RBP11.71□□□□□ -0.53
VTI1A-208ENST00000494728 SIRPGQ9P1W8 387 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 SALL4Q9UJQ4 1053 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 NENFQ9UMX5 172 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 SATB2Q9UPW6 733 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 ENTPD2Q9Y5L3 495 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 SCINQ9Y6U3 715 aa11.71□□□□□ -0.53
VTI1A-208ENST00000494728 ASH1LQ9NR48 2969 aaKnown RBP11.71□□□□□ -0.54
VTI1A-208ENST00000494728 A0A087X0T9 212 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 A0A0U1RQS6 177 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 RECQL5O94762 991 aaPredicted RBP11.7□□□□□ -0.54
VTI1A-208ENST00000494728 SERPINC1P01008 464 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 GYPCP04921 128 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 FAM228BP0C875 321 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 PCK1P35558 622 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 HCAR3P49019 387 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 SCNN1BP51168 640 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 SUOXP51687 545 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 MAXP61244 160 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 TLE3Q04726 772 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 TRAF2Q12933 501 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 IHHQ14623 411 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 LBRQ14739 615 aaKnown RBP11.7□□□□□ -0.54
VTI1A-208ENST00000494728 GRM3Q14832 879 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 C3orf38Q5JPI3 329 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 CFAP58Q5T655 872 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 FAXCQ5TGI0 409 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 TMCO4Q5TGY1 634 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 ERAP2Q6P179 960 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 ENPP7Q6UWV6 458 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 LIPIQ6XZB0 460 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 DPPA4Q7L190 304 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 RD3Q7Z3Z2 195 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 PSTKQ8IV42 348 aaKnown RBP11.7□□□□□ -0.54
VTI1A-208ENST00000494728 SPACA3Q8IXA5 215 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 PTCD2Q8WV60 388 aaKnown RBP11.7□□□□□ -0.54
VTI1A-208ENST00000494728 FGF11Q92914 225 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 PRR11Q96HE9 360 aaPredicted RBP11.7□□□□□ -0.54
VTI1A-208ENST00000494728 NAF1Q96HR8 494 aaKnown RBP11.7□□□□□ -0.54
VTI1A-208ENST00000494728 TBATAQ96M53 351 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 CCDC3Q9BQI4 270 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 LGR4Q9BXB1 951 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 EDEM3Q9BZQ6 932 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 SLC13A1Q9BZW2 595 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 B4GALT6Q9UBX8 382 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 PCDHGC4Q9Y5F7 938 aa11.7□□□□□ -0.54
VTI1A-208ENST00000494728 SPENQ96T58 3664 aaKnown RBP11.7□□□□□ -0.54
VTI1A-208ENST00000494728 A0A1W2PQJ5 194 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 H3BRJ5 948 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 MFSD11O43934 449 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 MAFKO60675 156 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 DXOO77932 396 aaKnown RBP11.69□□□□□ -0.54
VTI1A-208ENST00000494728 MAP3K6O95382 1288 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 PRB1P04280 392 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 ANXA6P08133 673 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 ELFN1P0C7U0 828 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 MYBL1P10243 752 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 DESP17661 470 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 LHCGRP22888 699 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 IL4RP24394 825 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 PEX5P50542 639 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 DUSP3P51452 185 aaPredicted RBP11.69□□□□□ -0.54
VTI1A-208ENST00000494728 SRP54P61011 504 aaKnown RBP11.69□□□□□ -0.54
VTI1A-208ENST00000494728 BCL2L1Q07817 233 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 MMRN1Q13201 1228 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 MTM1Q13496 603 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 RFTN1Q14699 578 aaPredicted RBP11.69□□□□□ -0.54
VTI1A-208ENST00000494728 CNGA3Q16281 694 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 FAM182AQ5T1J6 154 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 PCSK4Q6UW60 755 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 B3GNT8Q7Z7M8 397 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 NIPA2Q8N8Q9 360 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 CCL4L1Q8NHW4 92 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 CCDC74AQ96AQ1 378 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 WDR92Q96MX6 357 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 FCRL3Q96P31 734 aaPredicted RBP11.69□□□□□ -0.54
VTI1A-208ENST00000494728 RBM15Q96T37 977 aaKnown RBP eCLIP11.69□□□□□ -0.54
VTI1A-208ENST00000494728 NUP85Q9BW27 656 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 POLR1BQ9H9Y6 1135 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 KLQ9UEF7 1012 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 SEPT3Q9UH03 358 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 ANAPC7Q9UJX3 599 aa11.69□□□□□ -0.54
VTI1A-208ENST00000494728 TOR1BO14657 336 aa11.68□□□□□ -0.54
VTI1A-208ENST00000494728 HTRA2O43464 458 aaPredicted RBP11.68□□□□□ -0.54
VTI1A-208ENST00000494728 RASGRP1O95267 797 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms