RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 APLFQ8IW19 511 aaPredicted RBP3.11□□□□□ -1.91
SMC4-220ENST00000488017 WDR63Q8IWG1 891 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 ZNF440Q8IYI8 595 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 SYTL1Q8IYJ3 562 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 WDR20Q8TBZ3 569 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 SLC20A1Q8WUM9 679 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 PRDM8Q9NQV8 689 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 ENTPD7Q9NQZ7 604 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 ZNF624Q9P2J8 865 aaPredicted RBP3.11□□□□□ -1.91
SMC4-220ENST00000488017 FAF1Q9UNN5 650 aaPredicted RBP3.11□□□□□ -1.91
SMC4-220ENST00000488017 CNPY2Q9Y2B0 182 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 PCDHGB5Q9Y5G0 923 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 ANO9A1A5B4 782 aa3.1□□□□□ -1.91
SMC4-220ENST00000488017 GOLGA6L3A6NEY3 463 aa3.1□□□□□ -1.91
SMC4-220ENST00000488017 TNFRSF6BO95407 300 aa3.1□□□□□ -1.91
SMC4-220ENST00000488017 ADAP00813 363 aa3.1□□□□□ -1.91
SMC4-220ENST00000488017 GAGE5Q13069 117 aa3.1□□□□□ -1.91
SMC4-220ENST00000488017 GAGE6Q13070 117 aa3.1□□□□□ -1.91
SMC4-220ENST00000488017 HERC6Q8IVU3 1022 aa3.1□□□□□ -1.91
SMC4-220ENST00000488017 GHDCQ8N2G8 530 aa3.1□□□□□ -1.91
SMC4-220ENST00000488017 TRIM58Q8NG06 486 aa3.1□□□□□ -1.91
SMC4-220ENST00000488017 PPM1EQ8WY54 764 aa3.1□□□□□ -1.91
SMC4-220ENST00000488017 ABTB1Q969K4 478 aaPredicted RBP3.1□□□□□ -1.91
SMC4-220ENST00000488017 ERGIC1Q969X5 290 aa3.1□□□□□ -1.91
SMC4-220ENST00000488017 C3orf49Q96BT1 292 aa3.1□□□□□ -1.91
SMC4-220ENST00000488017 KXD1Q9BQD3 176 aa3.1□□□□□ -1.91
SMC4-220ENST00000488017 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.1□□□□□ -1.91
SMC4-220ENST00000488017 TYW5A2RUC4 315 aaKnown RBP3.09□□□□□ -1.91
SMC4-220ENST00000488017 PSMD14O00487 310 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 SEPT4O43236 478 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 MTA2O94776 668 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 SRD5A1P18405 259 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 DCTP40126 519 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 MMP14P50281 582 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 TBL3Q12788 808 aaKnown RBP3.09□□□□□ -1.91
SMC4-220ENST00000488017 NEDD9Q14511 834 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 ARHGEF6Q15052 776 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 SOWAHAQ2M3V2 549 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 METTL7BQ6UX53 244 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 SYNE3Q6ZMZ3 975 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 RASGRP2Q7LDG7 609 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 CHERPQ8IWX8 916 aaKnown RBP3.09□□□□□ -1.91
SMC4-220ENST00000488017 AMER3Q8N944 861 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 ANKRD52Q8NB46 1076 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 SCAMP5Q8TAC9 235 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 TM9SF4Q92544 642 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 SCRN2Q96FV2 425 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 ST6GAL2Q96JF0 529 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 ART5Q96L15 291 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 NPLQ9BXD5 320 aaPredicted RBP3.09□□□□□ -1.91
SMC4-220ENST00000488017 PABPC3Q9H361 631 aaKnown RBP3.09□□□□□ -1.91
SMC4-220ENST00000488017 HDAC6Q9UBN7 1215 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 AMDHD2Q9Y303 409 aa3.09□□□□□ -1.91
SMC4-220ENST00000488017 GOLGA6L9A6NEM1 432 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 APAF1O14727 1248 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 ATP2C2O75185 946 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 ZNF8P17098 575 aaPredicted RBP3.08□□□□□ -1.92
SMC4-220ENST00000488017 ITGA2P17301 1181 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 ITGAXP20702 1163 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 S1PR1P21453 382 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 RYKP34925 604 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 GNL1P36915 607 aaPredicted RBP3.08□□□□□ -1.92
SMC4-220ENST00000488017 ESCO2Q56NI9 601 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 XKR6Q5GH73 641 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 C15orf39Q6ZRI6 1047 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 RNF113BQ8IZP6 322 aaKnown RBP3.08□□□□□ -1.92
SMC4-220ENST00000488017 C1orf87Q8N0U7 546 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 FGFBP3Q8TAT2 258 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 SNAPC3Q92966 411 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 TAAR8Q969N4 342 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 ZNF653Q96CK0 615 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 CCDC138Q96M89 665 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 MYD88Q99836 296 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 PADI1Q9ULC6 663 aa3.08□□□□□ -1.92
SMC4-220ENST00000488017 MEIOCA2RUB1 952 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 MYL3P08590 195 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 PRSS56P0CW18 603 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 GNB3P16520 340 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 ZNF26P17031 533 aaPredicted RBP3.07□□□□□ -1.92
SMC4-220ENST00000488017 CLCNKAP51800 687 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 EEF1A1P68104 462 aaKnown RBP3.07□□□□□ -1.92
SMC4-220ENST00000488017 MRPS5P82675 430 aaKnown RBP3.07□□□□□ -1.92
SMC4-220ENST00000488017 CTF1Q16619 201 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 LONRF1Q17RB8 773 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 STXBP5Q5T5C0 1151 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 EEF1A1P5Q5VTE0 462 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 CES5AQ6NT32 575 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 ATF7IPQ6VMQ6 1270 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 B3GNT6Q6ZMB0 384 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 PARP16Q8N5Y8 322 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 STPG4Q8N801 248 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 DNAAF1Q8NEP3 725 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 TMEM41AQ96HV5 264 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 ZNF354BQ96LW1 612 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 RBM4BQ9BQ04 359 aaKnown RBP3.07□□□□□ -1.92
SMC4-220ENST00000488017 HERC2P3Q9BVR0 1158 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 PLEKHA2Q9HB19 425 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 C2orf42Q9NWW7 574 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 KCND3Q9UK17 655 aa3.07□□□□□ -1.92
SMC4-220ENST00000488017 NFE2L3Q9Y4A8 694 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms