RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 ITGB7P26010 798 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 TNFRSF8P28908 595 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 GRK6P43250 576 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 DRG2P55039 364 aaKnown RBP17.2■□□□□ 0.34
VIM-205ENST00000485947 SLC7A5Q01650 507 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 NAA30Q147X3 362 aaPredicted RBP17.2■□□□□ 0.34
VIM-205ENST00000485947 PRKD1Q15139 912 aaPredicted RBP17.2■□□□□ 0.34
VIM-205ENST00000485947 C4orf22Q6V702 233 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 DPY19L3Q6ZPD9 716 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 EIF1ADQ8N9N8 165 aaKnown RBP17.2■□□□□ 0.34
VIM-205ENST00000485947 SEC14L1Q92503 715 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 RAB7BQ96AH8 199 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 SLC6A18Q96N87 628 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 ELF4Q99607 663 aaPredicted RBP17.2■□□□□ 0.34
VIM-205ENST00000485947 TRIM51Q9BSJ1 452 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 OSBPL1AQ9BXW6 950 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 EBF2Q9HAK2 575 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 IL21RQ9HBE5 538 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 GDF3Q9NR23 364 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 AASDHPPTQ9NRN7 309 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 FAM114A2Q9NRY5 505 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 RAB21Q9UL25 225 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 APOBEC2Q9Y235 224 aaKnown RBP17.2■□□□□ 0.34
VIM-205ENST00000485947 NEU2Q9Y3R4 380 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 SLCO1B1Q9Y6L6 691 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 A0A1B0GTQ1 180 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 FAM221BA6H8Z2 402 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 TLR4O00206 839 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 AP1G1O43747 822 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 CD160O95971 181 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 KRT14P02533 472 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 GLDCP23378 1020 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 GARSP41250 739 aaKnown RBP17.19■□□□□ 0.34
VIM-205ENST00000485947 ARRB1P49407 418 aaPredicted RBP17.19■□□□□ 0.34
VIM-205ENST00000485947 NEK3P51956 506 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 SNRPD1P62314 119 aaKnown RBP17.19■□□□□ 0.34
VIM-205ENST00000485947 GUCY2DQ02846 1103 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 PPIDQ08752 370 aaKnown RBP17.19■□□□□ 0.34
VIM-205ENST00000485947 STAT4Q14765 748 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 ARSIQ5FYB1 569 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 DUPD1Q68J44 220 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 ARHGAP12Q8IWW6 846 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 BAHD1Q8TBE0 780 aaPredicted RBP17.19■□□□□ 0.34
VIM-205ENST00000485947 SETD7Q8WTS6 366 aaKnown RBP17.19■□□□□ 0.34
VIM-205ENST00000485947 TSGA13Q96PP4 275 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 FAM129AQ9BZQ8 928 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 EPB41L5Q9HCM4 733 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 NDFIP2Q9NV92 336 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 NEUROG3Q9Y4Z2 214 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 WASF2Q9Y6W5 498 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 ADAMTS9Q9P2N4 1935 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 KNL1Q8NG31 2342 aa17.19■□□□□ 0.34
VIM-205ENST00000485947 NYNRINQ9P2P1 1898 aaKnown RBP17.18■□□□□ 0.34
VIM-205ENST00000485947 ARHGAP42A6NI28 874 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 LEFTY1O75610 366 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 STK10O94804 968 aaKnown RBP17.18■□□□□ 0.34
VIM-205ENST00000485947 MAP3K6O95382 1288 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 POP4O95707 220 aaKnown RBP17.18■□□□□ 0.34
VIM-205ENST00000485947 PROS1P07225 676 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 CCNCP24863 283 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 RBL1P28749 1068 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 ACTN2P35609 894 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 ACVRL1P37023 503 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 RXRGP48443 463 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 NUMBP49757 651 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 CCNHP51946 323 aaPredicted RBP17.18■□□□□ 0.34
VIM-205ENST00000485947 METAP1P53582 386 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 TAS2R38P59533 333 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 MRPS25P82663 173 aaKnown RBP17.18■□□□□ 0.34
VIM-205ENST00000485947 RAD51Q06609 339 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 FOXC1Q12948 553 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 CUL1Q13616 776 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 P3H1Q32P28 736 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 TIGD7Q6NT04 549 aaPredicted RBP17.18■□□□□ 0.34
VIM-205ENST00000485947 HORMAD1Q86X24 394 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 ATPAF2Q8N5M1 289 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 CHST14Q8NCH0 376 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 BBOF1Q8ND07 529 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 CCNYQ8ND76 341 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 OR2AP1Q8NGE2 309 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 RHBDD1Q8TEB9 315 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 HTR3CQ8WXA8 447 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.18■□□□□ 0.34
VIM-205ENST00000485947 PARD6BQ9BYG5 372 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 TNKS2Q9H2K2 1166 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 USP29Q9HBJ7 922 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 HECAQ9UBI9 543 aaPredicted RBP17.18■□□□□ 0.34
VIM-205ENST00000485947 ASIC3Q9UHC3 531 aa17.18■□□□□ 0.34
VIM-205ENST00000485947 SHROOM3Q8TF72 1996 aa17.17■□□□□ 0.34
VIM-205ENST00000485947 SPAARA0A1B0GVQ0 90 aa17.17■□□□□ 0.34
VIM-205ENST00000485947 H0Y8X5 98 aa17.17■□□□□ 0.34
VIM-205ENST00000485947 KCNN4O15554 427 aa17.17■□□□□ 0.34
VIM-205ENST00000485947 NXPH1P58417 271 aa17.17■□□□□ 0.34
VIM-205ENST00000485947 PPP2CBP62714 309 aa17.17■□□□□ 0.34
VIM-205ENST00000485947 PPP2CAP67775 309 aa17.17■□□□□ 0.34
VIM-205ENST00000485947 AP1B1Q10567 949 aa17.17■□□□□ 0.34
VIM-205ENST00000485947 GRM3Q14832 879 aa17.17■□□□□ 0.34
VIM-205ENST00000485947 KIAA1161Q6NSJ0 714 aa17.17■□□□□ 0.34
VIM-205ENST00000485947 CCDC13Q8IYE1 715 aa17.17■□□□□ 0.34
VIM-205ENST00000485947 GRIN3AQ8TCU5 1115 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms