RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 GPD2P43304 727 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 CHRNA4P43681 627 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 RAD51Q06609 339 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 MERTKQ12866 999 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 INAQ16352 499 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 TNFAIP8L3Q5GJ75 292 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 HEXDCQ8WVB3 486 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 CIDEBQ9UHD4 219 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 ANKRD6Q9Y2G4 727 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 TFAP2AP05549 437 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 NDUFV1P49821 464 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 PIGFQ07326 219 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 SPANXN2Q5MJ10 180 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 NCCRP1Q6ZVX7 275 aaPredicted RBP13.57□□□□□ -0.24
USP42-206ENST00000479544 CLEC4DQ8WXI8 215 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 FBXL18Q96ME1 805 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 ZNF512Q96ME7 567 aaPredicted RBP13.57□□□□□ -0.24
USP42-206ENST00000479544 NTPCRQ9BSD7 190 aaKnown RBP13.57□□□□□ -0.24
USP42-206ENST00000479544 POLE4Q9NR33 117 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 WWOXQ9NZC7 414 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 ADAM28Q9UKQ2 775 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 K7EPI3 171 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 STX7O15400 261 aaKnown RBP13.57□□□□□ -0.24
USP42-206ENST00000479544 PPP1R3AQ16821 1122 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 SV2CQ496J9 727 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 PCID2Q5JVF3 399 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 TTC23Q5W5X9 447 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 DPY19L2P1Q6NXN4 242 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 CNTD1Q8N815 330 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 CLHC1Q8NHS4 586 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 KLHL5Q96PQ7 755 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 TPK1Q9H3S4 243 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 DPEP3Q9H4B8 488 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 TMEM134Q9H6X4 195 aa13.57□□□□□ -0.24
USP42-206ENST00000479544 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.56□□□□□ -0.24
USP42-206ENST00000479544 SCAMP3O14828 347 aaKnown RBP13.56□□□□□ -0.24
USP42-206ENST00000479544 FADS2O95864 444 aaKnown RBP13.56□□□□□ -0.24
USP42-206ENST00000479544 NTRK1P04629 796 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 CDKL1Q00532 357 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 MARC1Q5VT66 337 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 NOTUMQ6P988 496 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 SPATA2LQ8IUW3 424 aaPredicted RBP13.56□□□□□ -0.24
USP42-206ENST00000479544 THEM5Q8N1Q8 247 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 STX19Q8N4C7 294 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 WDTC1Q8N5D0 677 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 REPS2Q8NFH8 660 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 OR10Q1Q8NGQ4 319 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 TSEN34Q9BSV6 310 aaKnown RBP13.56□□□□□ -0.24
USP42-206ENST00000479544 INVSQ9Y283 1065 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 ATRNL1Q5VV63 1379 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 IDH3BO43837 385 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 CYP7B1O75881 506 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 RECQL4O94761 1208 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 SIX3O95343 332 aaPredicted RBP13.56□□□□□ -0.24
USP42-206ENST00000479544 EPHX2P34913 555 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 LIPEQ05469 1076 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 WSCD1Q658N2 575 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 GLYATQ6IB77 296 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 SPPL2AQ8TCT8 520 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 SEPT8Q92599 483 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 ASIC4Q96FT7 647 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 DPY30Q9C005 99 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 MPP6Q9NZW5 540 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 PCDHGB4Q9UN71 923 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 FAM32AQ9Y421 112 aaKnown RBP13.56□□□□□ -0.24
USP42-206ENST00000479544 C4BP0C0L5 1744 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 AZIN1O14977 448 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 TBX1O43435 398 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 MED26O95402 600 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 CD86P42081 329 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 CDK9P50750 372 aaKnown RBP13.56□□□□□ -0.24
USP42-206ENST00000479544 TNK2Q07912 1038 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 NAB1Q13506 487 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 TMEM132BQ14DG7 1078 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 CCDC142Q17RM4 750 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 SPOUT1Q5T280 376 aaKnown RBP13.56□□□□□ -0.24
USP42-206ENST00000479544 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.56□□□□□ -0.24
USP42-206ENST00000479544 ANKRD52Q8NB46 1076 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 OR6J1Q8NGC5 347 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 MCFD2Q8NI22 146 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 FNDC8Q8TC99 324 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 NUAK2Q9H093 628 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 ZNHIT2Q9UHR6 403 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 CLDN25C9JDP6 229 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 PSMD11O00231 422 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 TP73O15350 636 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 IPO13O94829 963 aaKnown RBP13.56□□□□□ -0.24
USP42-206ENST00000479544 ARF4P18085 180 aaPredicted RBP13.56□□□□□ -0.24
USP42-206ENST00000479544 ZC3H12BQ5HYM0 836 aaKnown RBP13.56□□□□□ -0.24
USP42-206ENST00000479544 ABI1Q8IZP0 508 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 UBE2J2Q8N2K1 259 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 ISOC1Q96CN7 298 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 DMRTB1Q96MA1 342 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 PRICKLE1Q96MT3 831 aaPredicted RBP13.56□□□□□ -0.24
USP42-206ENST00000479544 TRMT13Q9NUP7 481 aaKnown RBP13.56□□□□□ -0.24
USP42-206ENST00000479544 TRHDEQ9UKU6 1024 aa13.56□□□□□ -0.24
USP42-206ENST00000479544 TNFRSF21O75509 655 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 GCATO75600 419 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 PRKCHP24723 683 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 PCSK6P29122 969 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms