RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ATP8A1Q9Y2Q0 1164 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 A0A1W2PQC6 194 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 LRRC53A6NM62 1247 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 DDX3XO00571 662 aaKnown RBP eCLIP12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ATMINO43313 823 aaPredicted RBP12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 HTRA2O43464 458 aaPredicted RBP12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 LRCH4O75427 683 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PALMO75781 387 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 RECQL5O94762 991 aaPredicted RBP12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 RASGRP1O95267 797 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 FTLP02792 175 aaPredicted RBP12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ALPIP09923 528 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CR2P20023 1033 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 IL1R2P27930 398 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TYRO3Q06418 890 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 IL10RBQ08334 325 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CCDC183Q5T5S1 534 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ESRP1Q6NXG1 681 aaKnown RBP12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ERAP2Q6P179 960 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CRTC1Q6UUV9 634 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ENPP7Q6UWV6 458 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 HID1Q8IV36 788 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PELI3Q8N2H9 469 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 AOPEPQ8N6M6 819 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ARL10Q8N8L6 244 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 LIN37Q96GY3 246 aaPredicted RBP12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 WDR92Q96MX6 357 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 NAP1L5Q96NT1 182 aaPredicted RBP12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PSKH2Q96QS6 385 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 NCAPGQ9BPX3 1015 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ISCUQ9H1K1 167 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ATP13A3Q9H7F0 1226 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TMEM63CQ9P1W3 806 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PCSK1NQ9UHG2 260 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 OR1A2Q9Y585 309 aa12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 FLNBO75369 2602 aaKnown RBP12.32□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 A0A1B0GTH6 734 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 A0A1W2PQM1 296 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TMEM202A6NGA9 273 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TMCO5BA8MYB1 307 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TNFRSF10CO14798 259 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PRKCGP05129 697 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 XPAP23025 273 aaPredicted RBP12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 HTR1BP28222 390 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 SERPINA4P29622 427 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PCK1P35558 622 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 UCNP55089 124 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 KIAA1024LP59773 190 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CXADRP78310 365 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 DPYSL2Q16555 572 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 C3orf38Q5JPI3 329 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 DPPA4Q7L190 304 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ZNF843Q8N446 348 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 LZTR1Q8N653 840 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 KYQ8NBH2 561 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 WDR36Q8NI36 951 aaKnown RBP12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PCDH19Q8TAB3 1148 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 KCNE4Q8WWG9 221 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 SCG3Q8WXD2 468 aaKnown RBP12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 NAF1Q96HR8 494 aaKnown RBP12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ZNF599Q96NL3 588 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 APPL1Q9UKG1 709 aa12.31□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 SETXQ7Z333 2677 aaKnown RBP12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CCDC187A0A096LP49 1063 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 EIF4E1BA6NMX2 242 aaKnown RBP12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ERVH48-1M5A8F1 160 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PRPSAP2O60256 369 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 NOBOXO60393 691 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 RNF8O76064 485 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TNFP01375 233 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 FUCA1P04066 466 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CTSEP14091 401 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PNLIPP16233 465 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 DESP17661 470 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TMPRSS3P57727 454 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 AP1S1P61966 158 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 POLR2LP62875 67 aaKnown RBP12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ZFP36L1Q07352 338 aaKnown RBP12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 BCL2L1Q07817 233 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 SLC10A7Q0GE19 358 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 C19orf57Q0VDD7 668 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 NR1I3Q14994 352 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ANO6Q4KMQ2 910 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 HGSNATQ68CP4 663 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 POLNQ7Z5Q5 900 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 B3GNT8Q7Z7M8 397 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 C17orf82Q86X59 251 aaPredicted RBP12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 GKN2Q86XP6 184 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PGBD5Q8N414 524 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 OR6C4Q8NGE1 309 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 OR56A4Q8NGH8 313 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 OR1E3Q8WZA6 343 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TTC9Q92623 222 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CCDC74AQ96AQ1 378 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PDXPQ96GD0 296 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 COQ10AQ96MF6 247 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 LGR4Q9BXB1 951 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CPNE5Q9HCH3 593 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 FGF22Q9HCT0 170 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ETNK2Q9NVF9 386 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms