RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 POU5F2Q8N7G0 328 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 GPR150Q8NGU9 434 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 BLOC1S5Q8TDH9 187 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 RHBDF1Q96CC6 855 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 OSBPL2Q9H1P3 480 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ACTL8Q9H568 366 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 XPNPEP3Q9NQH7 507 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 CRNNQ9UBG3 495 aaPredicted RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 LYPLA1O75608 230 aaPredicted RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 PDE5AO76074 875 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 PTTG1O95997 202 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 RPS17P08708 135 aaKnown RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 NFKBIAP25963 317 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 CHRNA5P30532 468 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 NUDT1P36639 197 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 GRIK1P39086 918 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 RANBP1P43487 201 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 NPY2RP49146 381 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 COLEC12Q5KU26 742 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 CALHM3Q86XJ0 350 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ARRDC4Q8NCT1 418 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 CALN1Q9BXU9 219 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ZNF277Q9NRM2 450 aaPredicted RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 PCDHB3Q9Y5E6 796 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 FAM92AA1XBS5 289 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 CLDN25C9JDP6 229 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 MED7O43513 233 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ABCB7O75027 752 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 BANF1O75531 89 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 LTFP02788 710 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 CHMP24386 653 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 PSMA2P25787 234 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 GMPRP36959 345 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 CACNB3P54284 484 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 GBE1Q04446 702 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 UBAP2LQ14157 1087 aaKnown RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ARL13AQ5H913 290 aaPredicted RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 TECRLQ5HYJ1 363 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 UBE2UQ5VVX9 321 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 FSTL4Q6MZW2 842 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 GPAT2Q6NUI2 795 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ZNF781Q8N8C0 355 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 DNAAF3Q8N9W5 541 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 NRBF2Q96F24 287 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 TEKT5Q96M29 485 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 GORASP2Q9H8Y8 452 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ORC6Q9Y5N6 252 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 SCN9AQ15858 1988 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 TTC34A8MYJ7 566 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 NPR1P16066 1061 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 ATP5F1P24539 256 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 PTPN6P29350 595 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 KCNC1P48547 511 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 EIF3EP60228 445 aaKnown RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 LRIT3Q3SXY7 679 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 BLOC1S3Q6QNY0 202 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 CCDC149Q6ZUS6 474 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 SNX32Q86XE0 403 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 DNERQ8NFT8 737 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 URGCPQ8TCY9 931 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 SDCCAG3Q96C92 435 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 C11orf24Q96F05 449 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 PIWIL1Q96J94 861 aaKnown RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 DNAJC1Q96KC8 554 aaKnown RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 CEP170P1Q96L14 293 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 TRIM54Q9BYV2 358 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 GSTO2Q9H4Y5 243 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 KLHL11Q9NVR0 708 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 TMEFF2Q9UIK5 374 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 MOSPD1Q9UJG1 213 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 MYH4Q9Y623 1939 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 SLC7A4O43246 635 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 ZW10O43264 779 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 SMAD6O43541 496 aaKnown RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 DDHD2O94830 711 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 BMPR1AP36894 532 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 PHC1P78364 1004 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 KRT33BQ14525 404 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 UGP2Q16851 508 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 ANKDD1AQ495B1 522 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 SLC9B1Q4ZJI4 515 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 CYP4A22Q5TCH4 519 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 SZRD1Q7Z422 152 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 OR2T34Q8NGX1 318 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 OR2T3Q8NH03 318 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 SNX19Q92543 992 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 HSPBAP1Q96EW2 488 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 FCRL5Q96RD9 977 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 SNRNP25Q9BV90 132 aaKnown RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 ILKAPQ9H0C8 392 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 PLEKHA5Q9HAU0 1116 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 NRBP2Q9NSY0 501 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 TJP2Q9UDY2 1190 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 DPP7Q9UHL4 492 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 TRHDEQ9UKU6 1024 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 KLF2Q9Y5W3 355 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 ARID2Q68CP9 1835 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 KPNA7A9QM74 516 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms