RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 TRPA1O75762 1119 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 SUPT7LO94864 414 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 CCNHP51946 323 aaPredicted RBP19.17■□□□□ 0.66
VIM-203ENST00000469543 FAM26DQ5JW98 314 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 OR7D4Q8NG98 312 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 RP9Q8TA86 221 aaKnown RBP19.17■□□□□ 0.66
VIM-203ENST00000469543 PRKD2Q9BZL6 878 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 WDR41Q9HAD4 459 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 MRM3Q9HC36 420 aaKnown RBP19.17■□□□□ 0.66
VIM-203ENST00000469543 PATJQ8NI35 1801 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 CAPN8A6NHC0 703 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 ADAM12O43184 909 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 EOMESO95936 686 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 GOT2P00505 430 aaKnown RBP19.17■□□□□ 0.66
VIM-203ENST00000469543 LTA4HP09960 611 aaKnown RBP19.17■□□□□ 0.66
VIM-203ENST00000469543 SLC6A4P31645 630 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 RGRP47804 291 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 NME5P56597 212 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 TIAL1Q01085 375 aaKnown RBP eCLIP19.17■□□□□ 0.66
VIM-203ENST00000469543 LBRQ14739 615 aaKnown RBP19.17■□□□□ 0.66
VIM-203ENST00000469543 MSANTD2Q6P1R3 559 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 AAGABQ6PD74 315 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 LAYNQ6UX15 382 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 CYHR1Q6ZMK1 362 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 CUZD1Q86UP6 607 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 PCSK9Q8NBP7 692 aaKnown RBP19.17■□□□□ 0.66
VIM-203ENST00000469543 NAT14Q8WUY8 206 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 VPS45Q9NRW7 570 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 PCDHGB4Q9UN71 923 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 PCDHGB5Q9Y5G0 923 aa19.17■□□□□ 0.66
VIM-203ENST00000469543 A0A087X1B8 175 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 C9JVG2 144 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 TLR5O60602 858 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 LYNP07948 512 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 PRKAA2P54646 552 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 RPS24P62847 133 aaKnown RBP19.16■□□□□ 0.66
VIM-203ENST00000469543 SERINC3Q13530 473 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 ZNF423Q2M1K9 1284 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 DBF4BQ8NFT6 615 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 C3orf30Q96M34 536 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 TRPC7Q9HCX4 862 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.16■□□□□ 0.66
VIM-203ENST00000469543 GREB1Q4ZG55 1949 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 IGLV3-10A0A075B6K4 115 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 A0A1B0GTL3 188 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 SLC2A3P11169 496 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 HTR7P34969 479 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 ART3Q13508 389 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 GRAMD1BQ3KR37 738 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 PIGGQ5H8A4 983 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 MAP3K21Q5TCX8 1036 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 AGAP9Q5VTM2 703 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 PIWIL4Q7Z3Z4 852 aaKnown RBP19.16■□□□□ 0.66
VIM-203ENST00000469543 PDSS2Q86YH6 399 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 CCDC117Q8IWD4 279 aaPredicted RBP19.16■□□□□ 0.66
VIM-203ENST00000469543 FUBP3Q96I24 572 aaKnown RBP eCLIP19.16■□□□□ 0.66
VIM-203ENST00000469543 GLT1D1Q96MS3 346 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 GCNAQ96QF7 691 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 SLC39A3Q9BRY0 314 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 SPON2Q9BUD6 331 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 PCDHAC1Q9H158 963 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 STK39Q9UEW8 545 aa19.16■□□□□ 0.66
VIM-203ENST00000469543 FNDC1Q4ZHG4 1894 aaPredicted RBP19.15■□□□□ 0.66
VIM-203ENST00000469543 UNC80Q8N2C7 3258 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 CCDC162PA2VCL2 907 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 MTMR11A4FU01 709 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 PRDX6P30041 224 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 CDKN1CP49918 316 aaPredicted RBP19.15■□□□□ 0.66
VIM-203ENST00000469543 PFKPQ01813 784 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 NRG1Q02297 640 aaPredicted RBP19.15■□□□□ 0.66
VIM-203ENST00000469543 SREBF2Q12772 1141 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 FLOT2Q14254 428 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 TCTN1Q2MV58 587 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 LGI2Q8N0V4 545 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 CPSF7Q8N684 471 aaKnown RBP19.15■□□□□ 0.66
VIM-203ENST00000469543 ATP6V0D2Q8N8Y2 350 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 NSUN5Q96P11 429 aaKnown RBP19.15■□□□□ 0.66
VIM-203ENST00000469543 ZBED2Q9BTP6 218 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP19.15■□□□□ 0.662e-8■■■■□ 26.1
VIM-203ENST00000469543 GMPR2Q9P2T1 348 aaKnown RBP19.15■□□□□ 0.66
VIM-203ENST00000469543 VTI1BQ9UEU0 232 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 SCOCQ9UIL1 159 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 LOC285095A0A1B0GVY8 99 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 TM4SF4P48230 202 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 GPNMBQ14956 572 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 BNC2Q6ZN30 1099 aaPredicted RBP19.15■□□□□ 0.66
VIM-203ENST00000469543 RNF180Q86T96 592 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 TEX26Q8N6G2 289 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 TTC16Q8NEE8 873 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 BHLHE22Q8NFJ8 381 aaPredicted RBP19.15■□□□□ 0.66
VIM-203ENST00000469543 CEP70Q8NHQ1 597 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 FAM50BQ9Y247 325 aa19.15■□□□□ 0.66
VIM-203ENST00000469543 H3BMM5 538 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 AOC2O75106 756 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 GJB5O95377 273 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 FOXA1P55317 472 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 NKX3-2P78367 333 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 FAM189BP81408 668 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 TRIP4Q15650 581 aaPredicted RBP19.14■□□□□ 0.65
VIM-203ENST00000469543 ZRSR2Q15696 482 aaKnown RBP19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms