RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 TEX44Q53QW1 395 aa20.07■□□□□ 0.8
COL9A3-202ENST00000452372 MEI1Q5TIA1 1274 aa20.07■□□□□ 0.8
COL9A3-202ENST00000452372 IL27RAQ6UWB1 636 aa20.07■□□□□ 0.8
COL9A3-202ENST00000452372 ZC3H18Q86VM9 953 aaKnown RBP20.07■□□□□ 0.8
COL9A3-202ENST00000452372 MFSD2AQ8NA29 543 aa20.07■□□□□ 0.8
COL9A3-202ENST00000452372 TMEM145Q8NBT3 493 aa20.07■□□□□ 0.8
COL9A3-202ENST00000452372 CXorf40AQ8TE69 158 aa20.07■□□□□ 0.8
COL9A3-202ENST00000452372 PDCD6IPQ8WUM4 868 aaKnown RBP20.07■□□□□ 0.8
COL9A3-202ENST00000452372 SKA1Q96BD8 255 aa20.07■□□□□ 0.8
COL9A3-202ENST00000452372 ALS2CR12Q96Q35 445 aa20.07■□□□□ 0.8
COL9A3-202ENST00000452372 SEPT10Q9P0V9 454 aa20.07■□□□□ 0.8
COL9A3-202ENST00000452372 ANKRD6Q9Y2G4 727 aa20.07■□□□□ 0.8
COL9A3-202ENST00000452372 PCDHB9Q9Y5E1 797 aa20.07■□□□□ 0.8
COL9A3-202ENST00000452372 RAI2Q9Y5P3 530 aa20.07■□□□□ 0.8
COL9A3-202ENST00000452372 MTSS1O43312 755 aa20.06■□□□□ 0.8
COL9A3-202ENST00000452372 MMP20O60882 483 aa20.06■□□□□ 0.8
COL9A3-202ENST00000452372 PGLSO95336 258 aa20.06■□□□□ 0.8
COL9A3-202ENST00000452372 WNT1P04628 370 aa20.06■□□□□ 0.8
COL9A3-202ENST00000452372 HNRNPA2B1P22626 353 aaKnown RBP20.06■□□□□ 0.8
COL9A3-202ENST00000452372 MMP12P39900 470 aa20.06■□□□□ 0.8
COL9A3-202ENST00000452372 SGCGQ13326 291 aa20.06■□□□□ 0.8
COL9A3-202ENST00000452372 NOMO1Q15155 1222 aa20.06■□□□□ 0.8
COL9A3-202ENST00000452372 KIF19Q2TAC6 998 aa20.06■□□□□ 0.8
COL9A3-202ENST00000452372 SLC45A4Q5BKX6 768 aa20.06■□□□□ 0.8
COL9A3-202ENST00000452372 ARMC12Q5T9G4 340 aa20.06■□□□□ 0.8
COL9A3-202ENST00000452372 ADAT2Q7Z6V5 191 aaKnown RBP20.06■□□□□ 0.8
COL9A3-202ENST00000452372 IQCHQ86VS3 1027 aa20.06■□□□□ 0.8
COL9A3-202ENST00000452372 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.06■□□□□ 0.8
COL9A3-202ENST00000452372 TRIM58Q8NG06 486 aa20.06■□□□□ 0.8
COL9A3-202ENST00000452372 ACTL9Q8TC94 416 aa20.06■□□□□ 0.8
COL9A3-202ENST00000452372 QKIQ96PU8 341 aaKnown RBP eCLIP20.06■□□□□ 0.8
COL9A3-202ENST00000452372 LENG8Q96PV6 779 aaPredicted RBP20.06■□□□□ 0.8
COL9A3-202ENST00000452372 PHTF1Q9UMS5 762 aa20.06■□□□□ 0.8
COL9A3-202ENST00000452372 HS3ST3A1Q9Y663 406 aa20.06■□□□□ 0.8
COL9A3-202ENST00000452372 CFAP69A5D8W1 941 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 FAM221BA6H8Z2 402 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 FZD6O60353 706 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 CBFA2T3O75081 653 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 PRKCGP05129 697 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 PTPN3P26045 913 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 AKT2P31751 481 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 CTSKP43235 329 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 OTUD4Q01804 1114 aaKnown RBP20.05■□□□□ 0.8
COL9A3-202ENST00000452372 WASHC5Q12768 1159 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 OVGP1Q12889 678 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 LAYNQ6UX15 382 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 DBX2Q6ZNG2 339 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 TEKT5Q96M29 485 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 AGAP3Q96P47 875 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 WRAP53Q9BUR4 548 aaKnown RBP20.05■□□□□ 0.8
COL9A3-202ENST00000452372 CEP41Q9BYV8 373 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 FZD3Q9NPG1 666 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 KLK13Q9UKR3 277 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 PPIL1Q9Y3C6 166 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 NEUROG3Q9Y4Z2 214 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 SNX11Q9Y5W9 270 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 PKD1L2Q7Z442 2459 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 LRRK1Q38SD2 2015 aa20.05■□□□□ 0.8
COL9A3-202ENST00000452372 PLXNB3Q9ULL4 1909 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 ZFYVE26Q68DK2 2539 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 DSPP15924 2871 aaKnown RBP20.04■□□□□ 0.8
COL9A3-202ENST00000452372 TLR4O00206 839 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 TM7SF2O76062 418 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 CPP00450 1065 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 MMP2P08253 660 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 NFKBIAP25963 317 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 C21orf59P57076 290 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 RPS6KA1Q15418 735 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 TRIP6Q15654 476 aaKnown RBP20.04■□□□□ 0.8
COL9A3-202ENST00000452372 FAM182AQ5T1J6 154 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 DPPA4Q7L190 304 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 CHCHD4Q8N4Q1 142 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 PIH1D2Q8WWB5 315 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 HTR3CQ8WXA8 447 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 IMP4Q96G21 291 aaKnown RBP20.04■□□□□ 0.8
COL9A3-202ENST00000452372 VAT1Q99536 393 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 KLF6Q99612 283 aaPredicted RBP20.04■□□□□ 0.8
COL9A3-202ENST00000452372 TDRD1Q9BXT4 1180 aaKnown RBP20.04■□□□□ 0.8
COL9A3-202ENST00000452372 SLC25A51Q9H1U9 297 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 ZMIZ1Q9ULJ6 1067 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 CA5BQ9Y2D0 317 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 MSRB2Q9Y3D2 182 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 TMEM131Q92545 1883 aa20.04■□□□□ 0.8
COL9A3-202ENST00000452372 GOLGA6L9A6NEM1 432 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 H7C0C1 242 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 ZSCAN12O43309 604 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 MAGEC1O60732 1142 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 PDHA1P08559 390 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 CA4P22748 312 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 CD86P42081 329 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 ATP5OP48047 213 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 LIG3P49916 1009 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 SKOR1P84550 965 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 SEMG2Q02383 582 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 KLF1Q13351 362 aaPredicted RBP20.03■□□□□ 0.8
COL9A3-202ENST00000452372 HLA-BQ31612 363 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 RAB44Q7Z6P3 723 aaPredicted RBP20.03■□□□□ 0.8
COL9A3-202ENST00000452372 NAXDQ8IW45 347 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 REXO1L1PQ8IX06 675 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 NDUFAF2Q8N183 169 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms