RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 FAM86C1Q9NVL1 165 aa13.1□□□□□ -0.31
VPS33A-202ENST00000451053 B4GALT6Q9UBX8 382 aa13.1□□□□□ -0.31
VPS33A-202ENST00000451053 DMGDHQ9UI17 866 aaKnown RBP13.1□□□□□ -0.31
VPS33A-202ENST00000451053 PHTF1Q9UMS5 762 aa13.1□□□□□ -0.31
VPS33A-202ENST00000451053 NUMA1Q14980 2115 aa13.1□□□□□ -0.31
VPS33A-202ENST00000451053 FANCMQ8IYD8 2048 aa13.1□□□□□ -0.31
VPS33A-202ENST00000451053 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 TBC1D3DA0A087WVF3 549 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 TBC1D3IA0A087WXS9 549 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 TBC1D3EA0A087X179 549 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 TBC1D3KA0A087X1G2 549 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 A0A0J9YYE9 177 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 A0A0U1RQS6 177 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 LOC285095A0A1B0GVY8 99 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 TBC1D3FA6NER0 549 aaPredicted RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 LRRC72A6NJI9 287 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 A8MX80 341 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 C10orf142B7Z368 130 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 TBC1D3LB9A6J9 549 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 SMAPO00193 183 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 RNGTTO60942 597 aaKnown RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 PCDH8O95206 1070 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 NDST3O95803 873 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 AGTP01019 485 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 TRBC1P01850 177 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 ALPIP09923 528 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 ATXN1LP0C7T5 689 aaKnown RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 TBC1D3HP0C7X1 549 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 ADRA1AP35348 466 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 FDFT1P37268 417 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 CHRNA4P43681 627 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 VPS41P49754 854 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 SUOXP51687 545 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 EPHB1P54762 984 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 RPL26P61254 145 aaKnown RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 POLR2LP62875 67 aaKnown RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 MRPS25P82663 173 aaKnown RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 CAV1Q03135 178 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 ELP6Q0PNE2 266 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 RALGDSQ12967 914 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 GPS1Q13098 491 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 SIM2Q14190 667 aaPredicted RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 QPCTQ16769 361 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 PMS2CLQ68D20 193 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 KIAA0895LQ68EN5 471 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 KCTD11Q693B1 232 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 TBC1D3GQ6DHY5 549 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 TBC1D3CQ6IPX1 549 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 ERAP2Q6P179 960 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 ZC3H14Q6PJT7 736 aaKnown RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 PRR23BQ6ZRT6 265 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 DPPA4Q7L190 304 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 ARMCX6Q7L4S7 300 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 SLC41A1Q8IVJ1 513 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 TBC1D3Q8IZP1 549 aaPredicted RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 SLC25A41Q8N5S1 370 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 PDCD7Q8N8D1 485 aaKnown RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 ATOH1Q92858 354 aaPredicted RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 RMDN1Q96DB5 314 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 MCCC1Q96RQ3 725 aaPredicted RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 APOL2Q9BQE5 337 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 WRAP53Q9BUR4 548 aaKnown RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 FSD1LQ9BXM9 530 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 KDM4CQ9H3R0 1056 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 PREBQ9HCU5 417 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 GDF3Q9NR23 364 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 RAB6BQ9NRW1 208 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 WHRNQ9P202 907 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 RAPGEFL1Q9UHV5 662 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 RPL26L1Q9UNX3 145 aaKnown RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 ZFR2Q9UPR6 939 aaKnown RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 AAR2Q9Y312 384 aaKnown RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 PPIL1Q9Y3C6 166 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 HCN4Q9Y3Q4 1203 aa13.09□□□□□ -0.31
VPS33A-202ENST00000451053 ARIH1Q9Y4X5 557 aaPredicted RBP13.09□□□□□ -0.31
VPS33A-202ENST00000451053 A0A1W2PQU0 124 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 GOLGA6CA6NDK9 693 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 GOLGA6BA6NDN3 693 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 CAPN8A6NHC0 703 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 NPIPB15A6NHN6 443 aaPredicted RBP13.08□□□□□ -0.32
VPS33A-202ENST00000451053 BHMG1C9JSJ3 638 aaPredicted RBP13.08□□□□□ -0.32
VPS33A-202ENST00000451053 NEMP1O14524 444 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 TSPAN6O43657 245 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 MMP20O60882 483 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 USP12O75317 370 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 FSBPO95073 299 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 IGHV4-34P06331 123 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 GOLGA6DP0CG33 693 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 HNF1BP35680 557 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 PTGER3P43115 390 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 GRIA4P48058 902 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 SEMA5AQ13591 1074 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 SLC1A5Q15758 541 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 LPAL2Q16609 132 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 TMEM52BQ4KMG9 183 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 SIRPB2Q5JXA9 342 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 SEL1L3Q68CR1 1132 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 USP45Q70EL2 814 aa13.08□□□□□ -0.32
VPS33A-202ENST00000451053 LPCAT2Q7L5N7 544 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms