RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 PTPRRQ15256 657 aa12.8□□□□□ -0.36
PRPF40A-203ENST00000448428 TAZQ16635 292 aa12.8□□□□□ -0.36
PRPF40A-203ENST00000448428 ODF2Q5BJF6 829 aa12.8□□□□□ -0.36
PRPF40A-203ENST00000448428 ALG1LQ6GMV1 187 aa12.8□□□□□ -0.36
PRPF40A-203ENST00000448428 NPNTQ6UXI9 565 aa12.8□□□□□ -0.36
PRPF40A-203ENST00000448428 RFX6Q8HWS3 928 aa12.8□□□□□ -0.36
PRPF40A-203ENST00000448428 CCDC13Q8IYE1 715 aa12.8□□□□□ -0.36
PRPF40A-203ENST00000448428 TPCN2Q8NHX9 752 aa12.8□□□□□ -0.36
PRPF40A-203ENST00000448428 ARRDC2Q8TBH0 407 aa12.8□□□□□ -0.36
PRPF40A-203ENST00000448428 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.8□□□□□ -0.36
PRPF40A-203ENST00000448428 POLR1EQ9GZS1 481 aaKnown RBP12.8□□□□□ -0.36
PRPF40A-203ENST00000448428 B4GALT6Q9UBX8 382 aa12.8□□□□□ -0.36
PRPF40A-203ENST00000448428 AMACRQ9UHK6 382 aa12.8□□□□□ -0.36
PRPF40A-203ENST00000448428 PHTF1Q9UMS5 762 aa12.8□□□□□ -0.36
PRPF40A-203ENST00000448428 RAI2Q9Y5P3 530 aa12.8□□□□□ -0.36
PRPF40A-203ENST00000448428 FAM221BA6H8Z2 402 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 KCNK1O00180 336 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 PSTPIP1O43586 416 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 SIGLEC6O43699 453 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 JCHAINP01591 159 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 HLA-DQB2P05538 268 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 PDHA1P08559 390 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 ELFN1P0C7U0 828 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 GIMD1P0DJR0 217 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 KRT10P13645 584 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 NME1P15531 152 aaKnown RBP12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 ZFXP17010 805 aaPredicted RBP12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 CES1P23141 567 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 CDC25BP30305 580 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 HNRNPKP61978 463 aaKnown RBP eCLIP12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 NIPAL4Q0D2K0 466 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 ZNF211Q13398 564 aaPredicted RBP12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 PTK2BQ14289 1009 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 ACOX1Q15067 660 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 LLGL1Q15334 1064 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 CCDC157Q569K6 752 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 FAM182AQ5T1J6 154 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 ARMC12Q5T9G4 340 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 C11orf63Q6NUN7 778 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 PARGQ86W56 976 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 TMEM139Q8IV31 216 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 CBARPQ8N350 705 aaPredicted RBP12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 SPC24Q8NBT2 197 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 PLA2G15Q8NCC3 412 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 PIH1D2Q8WWB5 315 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 SCRN2Q96FV2 425 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 ZNF830Q96NB3 372 aaPredicted RBP12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 IL12RB2Q99665 862 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 BAG1Q99933 345 aaPredicted RBP12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 APOOQ9BUR5 198 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 LACRTQ9GZZ8 138 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 IMPACTQ9P2X3 320 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 PNMA8BQ9ULN7 279 aaPredicted RBP12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 PPIL1Q9Y3C6 166 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 MSRB2Q9Y3D2 182 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 NEUROG3Q9Y4Z2 214 aa12.79□□□□□ -0.36
PRPF40A-203ENST00000448428 TOR1BO14657 336 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 FFAR2O15552 330 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 FZD6O60353 706 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 NEBLO76041 1014 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 ZRANB2O95218 330 aaKnown RBP eCLIP12.78□□□□□ -0.366e-7■□□□□ 8.7
PRPF40A-203ENST00000448428 IPO7O95373 1038 aaKnown RBP12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 PCCBP05166 539 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 JUNDP17535 347 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 CTPS1P17812 591 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 VIPR1P32241 457 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 MARCKSL1P49006 195 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 PEX5P50542 639 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 DYNLT1P63172 113 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 ADCY2Q08462 1091 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 AP1B1Q10567 949 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 PDK1Q15118 436 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 CNGA3Q16281 694 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 PROX2Q3B8N5 592 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 SPOCD1Q6ZMY3 1216 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 B4GALNT4Q76KP1 1039 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 DAAM2Q86T65 1068 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 KATNAL2Q8IYT4 538 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 RCOR2Q8IZ40 523 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 CNTD1Q8N815 330 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 ACRBPQ8NEB7 543 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 OR4C6Q8NH72 309 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 COQ10AQ96MF6 247 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 OLFM3Q96PB7 478 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 SMIM14Q96QK8 99 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 TCEAL2Q9H3H9 227 aaPredicted RBP12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 SAE1Q9UBE0 346 aaPredicted RBP12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 TTLL3Q9Y4R7 772 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 OR1A2Q9Y585 309 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 LRP4O75096 1905 aa12.78□□□□□ -0.36
PRPF40A-203ENST00000448428 A0A0U1RQS6 177 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 NEMP2A6NFY4 417 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 NPIPB15A6NHN6 443 aaPredicted RBP12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 BTNL10A8MVZ5 291 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 C1QTNF9BB2RNN3 333 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 H3BM21 787 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 SCAMP1O15126 338 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 PJA2O43164 708 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 CST8O60676 142 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 HEXIM1O94992 359 aaKnown RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms