RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 YBEYP58557 167 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-208ENST00000437607 AP1B1Q10567 949 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 POLD3Q15054 466 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-208ENST00000437607 PRKD1Q15139 912 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-208ENST00000437607 OASLQ15646 514 aaKnown RBP12.29□□□□□ -0.44
PTPRF-208ENST00000437607 GLE1Q53GS7 698 aaKnown RBP12.29□□□□□ -0.44
PTPRF-208ENST00000437607 TIGD7Q6NT04 549 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-208ENST00000437607 FBXL19Q6PCT2 694 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 ZNF783Q6ZMS7 281 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 SYDE1Q6ZW31 735 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-208ENST00000437607 JAMLQ86YT9 394 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 LRRC49Q8IUZ0 686 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 ARHGAP12Q8IWW6 846 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 ATL2Q8NHH9 583 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 PIP4K2CQ8TBX8 421 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 CCHCR1Q8TD31 782 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 FRS2Q8WU20 508 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 SLCO2A1Q92959 643 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 HMCESQ96FZ2 354 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 DCBLD2Q96PD2 775 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 TMEM121Q9BTD3 319 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 RAB17Q9H0T7 212 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 MUC3BQ9H195 1237 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 GDF3Q9NR23 364 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 NDFIP2Q9NV92 336 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 SEPT10Q9P0V9 454 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 ZNF212Q9UDV6 495 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 ASIC3Q9UHC3 531 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 ILVBLA1L0T0 632 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 TLR4O00206 839 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 TTI1O43156 1089 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 C1SP09871 688 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 RHOXF2BP0C7M4 288 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 C5AR1P21730 350 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 EIF2S3P41091 472 aaKnown RBP12.28□□□□□ -0.44
PTPRF-208ENST00000437607 RXRGP48443 463 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 GNA12Q03113 381 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 PPIDQ08752 370 aaKnown RBP12.28□□□□□ -0.44
PTPRF-208ENST00000437607 SFSWAPQ12872 951 aaKnown RBP12.28□□□□□ -0.44
PTPRF-208ENST00000437607 SLC10A2Q12908 348 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-208ENST00000437607 TARDBPQ13148 414 aaKnown RBP eCLIP12.28□□□□□ -0.443e-6■■■■□ 20.1
PTPRF-208ENST00000437607 PTK6Q13882 451 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 ARTNQ5T4W7 220 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 AFMIDQ63HM1 303 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-208ENST00000437607 CCDC13Q8IYE1 715 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 NETO2Q8NC67 525 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 MYRIPQ8NFW9 859 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 OR14C36Q8NHC7 312 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 NSMCE1Q8WV22 266 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 SKA1Q96BD8 255 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 NXPE2Q96DL1 559 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 SERAC1Q96JX3 654 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 LGMNQ99538 433 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 RHOXF2Q9BQY4 288 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 TRIM51Q9BSJ1 452 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 KLC2Q9H0B6 622 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 MAGEH1Q9H213 219 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 PCDH9Q9HC56 1237 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.28□□□□□ -0.444e-6■■■□□ 16
PTPRF-208ENST00000437607 SARDHQ9UL12 918 aa12.28□□□□□ -0.44
PTPRF-208ENST00000437607 UTP11Q9Y3A2 253 aaKnown RBP12.28□□□□□ -0.44
PTPRF-208ENST00000437607 V9GYY5 206 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-208ENST00000437607 FLNBO75369 2602 aaKnown RBP12.28□□□□□ -0.44
PTPRF-208ENST00000437607 IL1BP01584 269 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 PRB1P04280 392 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 JUPP14923 745 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 RBL1P28749 1068 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 ABCG1P45844 678 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 PAPOLAP51003 745 aaKnown RBP12.27□□□□□ -0.45
PTPRF-208ENST00000437607 ELAVL3Q14576 367 aaKnown RBP12.27□□□□□ -0.45
PTPRF-208ENST00000437607 RTP5Q14D33 572 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 HES3Q5TGS1 186 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 RNF219Q5W0B1 726 aaPredicted RBP12.27□□□□□ -0.45
PTPRF-208ENST00000437607 NAPEPLDQ6IQ20 393 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 CXorf57Q6NSI4 855 aaKnown RBP12.27□□□□□ -0.45
PTPRF-208ENST00000437607 TP53INP2Q8IXH6 220 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 FAM71DQ8N9W8 422 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 MFSD2AQ8NA29 543 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 DCAF4L2Q8NA75 395 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 OR52K2Q8NGK3 314 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 HTR3CQ8WXA8 447 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 LRRC1Q9BTT6 524 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 SLC39A8Q9C0K1 460 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 PRORYQ9H606 182 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 CAAP1Q9H8G2 361 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 ERVMER34-1Q9H9K5 563 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 ATP13A1Q9HD20 1204 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 HAUS2Q9NVX0 235 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 IPO11Q9UI26 975 aaKnown RBP12.27□□□□□ -0.45
PTPRF-208ENST00000437607 VPS28Q9UK41 221 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 HPCAL4Q9UM19 191 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 DRG1Q9Y295 367 aaKnown RBP12.27□□□□□ -0.45
PTPRF-208ENST00000437607 TBC1D30Q9Y2I9 924 aa12.27□□□□□ -0.45
PTPRF-208ENST00000437607 TBC1D3DA0A087WVF3 549 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 TBC1D3IA0A087WXS9 549 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 TBC1D3EA0A087X179 549 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 TBC1D3KA0A087X1G2 549 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 TBC1D3FA6NER0 549 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-208ENST00000437607 TBC1D3LB9A6J9 549 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms