RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 RALGDSQ12967 914 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 CLCA4Q14CN2 919 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 TBR1Q16650 682 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 CLEC16AQ2KHT3 1053 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 AMZ1Q400G9 498 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 INO80DQ53TQ3 878 aaPredicted RBP8.15□□□□□ -1.1
VIM-202ENST00000421459 OGFOD3Q6PK18 319 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 LVRNQ6Q4G3 990 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 SPRED1Q7Z699 444 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 GKN2Q86XP6 184 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 ZNF677Q86XU0 584 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 FAM114A1Q8IWE2 563 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 TSEN2Q8NCE0 465 aaKnown RBP8.15□□□□□ -1.1
VIM-202ENST00000421459 RCBTB1Q8NDN9 531 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 WDR48Q8TAF3 677 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 NTAN1Q96AB6 310 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 SGF29Q96ES7 293 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 MCEEQ96PE7 176 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 SELENOOQ9BVL4 669 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 FAM117AQ9C073 453 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 STRADBQ9C0K7 418 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 CLSTN2Q9H4D0 955 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 PDFQ9HBH1 243 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 RDH14Q9HBH5 336 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 CYP4F12Q9HCS2 524 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 LRIT1Q9P2V4 623 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 UBA2Q9UBT2 640 aaPredicted RBP8.15□□□□□ -1.1
VIM-202ENST00000421459 PCDHGA7Q9Y5G6 932 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 TRPM6Q9BX84 2022 aa8.15□□□□□ -1.11
VIM-202ENST00000421459 RELNP78509 3460 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 TSPAN11A1L157 253 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 ZSCAN5CA6NGD5 496 aaPredicted RBP8.14□□□□□ -1.11
VIM-202ENST00000421459 SIGLEC16A6NMB1 481 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 TMEM110-MUSTN1A8MSY1 372 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 WASH4PA8MWX3 477 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 TOR1BO14657 336 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 PRAMEF11O60813 436 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 MPSTP25325 297 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 HTR1BP28222 390 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 CCKBRP32239 447 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 NSFP46459 744 aaKnown RBP8.14□□□□□ -1.11
VIM-202ENST00000421459 POLD2P49005 469 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 ARSDP51689 593 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 ELP6Q0PNE2 266 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 MTM1Q13496 603 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 HLTFQ14527 1009 aaKnown RBP eCLIP8.14□□□□□ -1.11
VIM-202ENST00000421459 C16orf72Q14CZ0 275 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 KRT31Q15323 416 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 EFHC2Q5JST6 749 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 MANEAQ5SRI9 462 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 CERCAMQ5T4B2 595 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 PHF19Q5T6S3 580 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 NKAIN2Q5VXU1 208 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 SPECC1LQ69YQ0 1117 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 SMYD5Q6GMV2 418 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 ERAP2Q6P179 960 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 LIPIQ6XZB0 460 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 ZNF574Q6ZN55 896 aaPredicted RBP8.14□□□□□ -1.11
VIM-202ENST00000421459 MON1BQ7L1V2 547 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 SRLQ86TD4 932 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 NRROSQ86YC3 692 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 SLITRK4Q8IW52 837 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 UMODL1-AS1Q8N2C9 162 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 ARFGAP1Q8N6T3 406 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 OR56A4Q8NGH8 313 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 PATE1Q8WXA2 126 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 CASKIN2Q8WXE0 1202 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 TMEM74Q96NL1 305 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 NUDT22Q9BRQ3 303 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 ARHGAP9Q9BRR9 750 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 DPEP2Q9H4A9 486 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 RETREG1Q9H6L5 497 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 LRRC19Q9H756 370 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 STARD5Q9NSY2 213 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 SEPT11Q9NVA2 429 aaKnown RBP8.14□□□□□ -1.11
VIM-202ENST00000421459 TMEM51Q9NW97 253 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 TAS2R14Q9NYV8 317 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 IL17BQ9UHF5 180 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 APPL1Q9UKG1 709 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 ATP8A1Q9Y2Q0 1164 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 PLEKHM1Q9Y4G2 1056 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 PCDHGA4Q9Y5G9 962 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 HEMK1Q9Y5R4 338 aaPredicted RBP8.14□□□□□ -1.11
VIM-202ENST00000421459 ST14Q9Y5Y6 855 aa8.14□□□□□ -1.11
VIM-202ENST00000421459 TERTO14746 1132 aaKnown RBP8.13□□□□□ -1.11
VIM-202ENST00000421459 NVLO15381 856 aaKnown RBP8.13□□□□□ -1.11
VIM-202ENST00000421459 SUV39H1O43463 412 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 PALMO75781 387 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 FGF1P05230 155 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 LIPCP11150 499 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 GLB1P16278 677 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 AK4P27144 223 aaPredicted RBP8.13□□□□□ -1.11
VIM-202ENST00000421459 ERCC5P28715 1186 aaPredicted RBP8.13□□□□□ -1.11
VIM-202ENST00000421459 ALDH4A1P30038 563 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 STAT1P42224 750 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 MLLT3P42568 568 aaPredicted RBP8.13□□□□□ -1.11
VIM-202ENST00000421459 CSRP3P50461 194 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 ZNF143P52747 638 aaPredicted RBP8.13□□□□□ -1.11
VIM-202ENST00000421459 YBEYP58557 167 aaPredicted RBP8.13□□□□□ -1.11
VIM-202ENST00000421459 EIF3IQ13347 325 aaKnown RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms