RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 SOX9P48436 509 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 EPHB1P54762 984 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 MAGOHP61326 146 aaKnown RBP6.68□□□□□ -1.34
VPS41-204ENST00000413141 ACVR1Q04771 509 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 RAD51Q06609 339 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 LAMB3Q13751 1172 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 ZNF234Q14588 700 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 GRM3Q14832 879 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 TAF1AQ15573 450 aaPredicted RBP6.68□□□□□ -1.34
VPS41-204ENST00000413141 SMAD2Q15796 467 aaKnown RBP6.68□□□□□ -1.34
VPS41-204ENST00000413141 CNGA3Q16281 694 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 PREPLQ4J6C6 727 aaPredicted RBP6.68□□□□□ -1.34
VPS41-204ENST00000413141 FNDC3BQ53EP0 1204 aaKnown RBP6.68□□□□□ -1.34
VPS41-204ENST00000413141 ESRP1Q6NXG1 681 aaKnown RBP6.68□□□□□ -1.34
VPS41-204ENST00000413141 TRABD2AQ86V40 505 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 ZSWIM9Q86XI8 627 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 CNTN4Q8IWV2 1026 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 SUGP1Q8IWZ8 645 aaKnown RBP6.68□□□□□ -1.34
VPS41-204ENST00000413141 ZNF366Q8N895 744 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 CHST14Q8NCH0 376 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 MDGA1Q8NFP4 955 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 GRIN3AQ8TCU5 1115 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 CSGALNACT1Q8TDX6 532 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 MZB1Q8WU39 189 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 UCMAQ8WVF2 138 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 PIH1D2Q8WWB5 315 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 DNASE1L2Q92874 299 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 HLA-CQ95604 372 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 ECHDC3Q96DC8 303 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 DNAJC1Q96KC8 554 aaKnown RBP6.68□□□□□ -1.34
VPS41-204ENST00000413141 ZNF641Q96N77 438 aaPredicted RBP6.68□□□□□ -1.34
VPS41-204ENST00000413141 SMIM14Q96QK8 99 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 FAM167BQ9BTA0 163 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 PHF7Q9BWX1 381 aaPredicted RBP6.68□□□□□ -1.34
VPS41-204ENST00000413141 MTG2Q9H4K7 406 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 UGT1A7Q9HAW7 530 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 UGT1A10Q9HAW8 530 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 UGT1A8Q9HAW9 530 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 KCNK12Q9HB15 430 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 C20orf96Q9NUD7 363 aaPredicted RBP6.68□□□□□ -1.34
VPS41-204ENST00000413141 POLR3BQ9NW08 1133 aaPredicted RBP6.68□□□□□ -1.34
VPS41-204ENST00000413141 HACD3Q9P035 362 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 IL36AQ9UHA7 158 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 GGT7Q9UJ14 662 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 HCN2Q9UL51 889 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 RIMKLBQ9ULI2 386 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 NOVA2Q9UNW9 492 aaKnown RBP6.68□□□□□ -1.34
VPS41-204ENST00000413141 PLA2G4CQ9UP65 541 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 ZNF711Q9Y462 761 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 KCTD3Q9Y597 815 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 PSAT1Q9Y617 370 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 ARL5AQ9Y689 179 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 IKBKGQ9Y6K9 419 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 WASF2Q9Y6W5 498 aa6.68□□□□□ -1.34
VPS41-204ENST00000413141 EYSQ5T1H1 3165 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 A0A0J9YYE9 177 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 IQANK1A0A1B0GTG1 560 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 EDDM13A0A1B0GTR0 161 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 A0A1W2PQ67 120 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 TSPAN11A1L157 253 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 FOXO6A8MYZ6 492 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 SPECC1L-ADORA2AF8WAN1 911 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 GOLGA8TH3BQL2 631 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 CCL22O00626 93 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 AURKAO14965 403 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 SLC7A4O43246 635 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 SIN3BO75182 1162 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 LEFTY1O75610 366 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 RPP40O75818 363 aaKnown RBP6.67□□□□□ -1.34
VPS41-204ENST00000413141 VAPBO95292 243 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 TRBC1P01850 177 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 SLC4A1P02730 911 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 APODP05090 189 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 F7P08709 466 aaPredicted RBP6.67□□□□□ -1.34
VPS41-204ENST00000413141 ALPIP09923 528 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 HLA-EP13747 358 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 CTPS1P17812 591 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 KRT15P19012 456 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 PSMA3P25788 255 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 HPDP32754 393 aaPredicted RBP6.67□□□□□ -1.34
VPS41-204ENST00000413141 CTHP32929 405 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 GP5P40197 560 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 ABL2P42684 1182 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 IL12RB1P42701 662 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 SLC1A2P43004 574 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 SERPINB9P50453 376 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 ARSDP51689 593 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 PDE1BQ01064 536 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 BMPR2Q13873 1038 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 ELAVL3Q14576 367 aaKnown RBP6.67□□□□□ -1.34
VPS41-204ENST00000413141 PTPRCAPQ14761 206 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 PTPRRQ15256 657 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 SKIDA1Q1XH10 827 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 HNRNPA1L2Q32P51 320 aaKnown RBP6.67□□□□□ -1.34
VPS41-204ENST00000413141 LEXMQ3ZCV2 418 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 HSP90AA5PQ58FG0 334 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 TEDDM1Q5T9Z0 273 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 EGFLAMQ63HQ2 1017 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 BRAT1Q6PJG6 821 aa6.67□□□□□ -1.34
VPS41-204ENST00000413141 TXNDC11Q6PKC3 985 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms