RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ACSM2AQ08AH3 577 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 ACSM2BQ68CK6 577 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 LAPTM4BQ86VI4 370 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF557Q8N988 423 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-206ENST00000409809 STOML3Q8TAV4 291 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 PLA2G12BQ9BX93 195 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 GJB4Q9NTQ9 266 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 PLLPQ9Y342 182 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 LRRC42Q9Y546 428 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 M0R233 179 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 DPYSL4O14531 572 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 CSPG5O95196 566 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 C9P02748 559 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 MTHFRP42898 656 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF613Q6PF04 617 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 WDR49Q8IV35 697 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF567Q8N184 647 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 RDH12Q96NR8 316 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF341Q9BYN7 854 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 CLEC4AQ9UMR7 237 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 EDARQ9UNE0 448 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 MRPS7Q9Y2R9 242 aaKnown RBP12.93□□□□□ -0.34
COL6A3-206ENST00000409809 DGKAP23743 735 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 CTSKP43235 329 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 GRIA4P48058 902 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 TMEM53Q6P2H8 277 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 BAIAP2L2Q6UXY1 529 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 COMMD2Q86X83 199 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 DSELQ8IZU8 1212 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF615Q8N8J6 731 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 ZSWIM2Q8NEG5 633 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF717Q9BY31 904 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-206ENST00000409809 CAPN8A6NHC0 703 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 FADS2P1A8MWK0 482 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 CABYRO75952 493 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 OR7A10O76100 309 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF470Q6ECI4 717 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 KCTD8Q6ZWB6 473 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 FRMD6Q96NE9 622 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 SEPT5Q99719 369 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-206ENST00000409809 FAM126AQ9BYI3 521 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-206ENST00000409809 PCDHGB3Q9Y5G1 929 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 MROH2AA6NES4 1674 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 CNTNAP5Q8WYK1 1306 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 GSG1L2A8MUP6 293 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 PLD2O14939 933 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 PCDHGA12O60330 932 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 CCNT2O60583 730 aaKnown RBP12.93□□□□□ -0.34
COL6A3-206ENST00000409809 SCELO95171 688 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF14P17017 642 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-206ENST00000409809 GDI2P50395 445 aaKnown RBP12.93□□□□□ -0.34
COL6A3-206ENST00000409809 CYP4V2Q6ZWL3 525 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-206ENST00000409809 COLGALT2Q8IYK4 626 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF701M0R085 212 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-206ENST00000409809 FADS2O95864 444 aaKnown RBP12.93□□□□□ -0.34
COL6A3-206ENST00000409809 RARAP10276 462 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 SLC2A2P11168 524 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-206ENST00000409809 COX7A2P14406 83 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 RBL1P28749 1068 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 LCN1P31025 176 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 ASMTP46597 345 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 COLGALT1Q8NBJ5 622 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 MIPEPQ99797 713 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 KCNE2Q9Y6J6 123 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 OR5F1O95221 314 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 CD2P06729 351 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 TTPAP49638 278 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 GJA9P57773 515 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 SWSAP1Q6NVH7 229 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 DAW1Q8N136 415 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 ACE2Q9BYF1 805 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-206ENST00000409809 C1orf21Q9H246 121 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 A0A0A0MRY4 1105 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 MYBP10242 640 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 LIPEQ05469 1076 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 TEAD4Q15561 434 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 ASB12Q8WXK4 309 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 SPATA13Q96N96 652 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 ACOX2Q99424 681 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 MMP27Q9H306 513 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 XPNPEP3Q9NQH7 507 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 PLEKHA6Q9Y2H5 1048 aa12.93□□□□□ -0.34
COL6A3-206ENST00000409809 FABP12A6NFH5 140 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 BIKQ13323 160 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 SH3D19Q5HYK7 790 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 ATF7IP2Q5U623 682 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 TBC1D15Q8TC07 691 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 FAM84AQ96KN4 292 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF347Q96SE7 839 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF639Q9UID6 485 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 NCKAP1Q9Y2A7 1128 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 SETD1AO15047 1707 aaKnown RBP12.92□□□□□ -0.34
COL6A3-206ENST00000409809 PABPC4LP0CB38 370 aaKnown RBP12.92□□□□□ -0.34
COL6A3-206ENST00000409809 EIF4BP23588 611 aaKnown RBP12.92□□□□□ -0.34
COL6A3-206ENST00000409809 SLC7A1P30825 629 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 TRIM23P36406 574 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 FGL1Q08830 312 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 RNF149Q8NC42 400 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 ATXN3LQ9H3M9 355 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 MKS1Q9NXB0 559 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms