RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 RMDN1Q96DB5 314 aa29.48■■■□□ 2.31
USP42-202ENST00000404008 SMIM14Q96QK8 99 aa29.48■■■□□ 2.31
USP42-202ENST00000404008 B4GALT6Q9UBX8 382 aa29.48■■■□□ 2.31
USP42-202ENST00000404008 RNGTTO60942 597 aaKnown RBP29.47■■■□□ 2.31
USP42-202ENST00000404008 AP2A1O95782 977 aa29.47■■■□□ 2.31
USP42-202ENST00000404008 AGTP01019 485 aa29.47■■■□□ 2.31
USP42-202ENST00000404008 ALPIP09923 528 aa29.47■■■□□ 2.31
USP42-202ENST00000404008 TNNT3P45378 269 aaPredicted RBP29.47■■■□□ 2.31
USP42-202ENST00000404008 PPP2CBP62714 309 aa29.47■■■□□ 2.31
USP42-202ENST00000404008 PPP2CAP67775 309 aa29.47■■■□□ 2.31
USP42-202ENST00000404008 C2orf54Q08AI8 447 aa29.47■■■□□ 2.31
USP42-202ENST00000404008 RALGDSQ12967 914 aa29.47■■■□□ 2.31
USP42-202ENST00000404008 PTPRRQ15256 657 aa29.47■■■□□ 2.31
USP42-202ENST00000404008 SIRPB2Q5JXA9 342 aa29.47■■■□□ 2.31
USP42-202ENST00000404008 KIAA0895LQ68EN5 471 aa29.47■■■□□ 2.31
USP42-202ENST00000404008 TRIM69Q86WT6 500 aa29.47■■■□□ 2.31
USP42-202ENST00000404008 SLC41A1Q8IVJ1 513 aa29.47■■■□□ 2.31
USP42-202ENST00000404008 PDCD7Q8N8D1 485 aaKnown RBP29.47■■■□□ 2.31
USP42-202ENST00000404008 KRT12Q99456 494 aa29.47■■■□□ 2.31
USP42-202ENST00000404008 FICDQ9BVA6 458 aa29.47■■■□□ 2.31
USP42-202ENST00000404008 TRPM6Q9BX84 2022 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 CAPN8A6NHC0 703 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 NPIPB15A6NHN6 443 aaPredicted RBP29.46■■■□□ 2.31
USP42-202ENST00000404008 PSMD3O43242 534 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 IGHV4-34P06331 123 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 HNF1BP35680 557 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 VPS41P49754 854 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 CCR5P51681 352 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 DR1Q01658 176 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 GPS1Q13098 491 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 OLIG2Q13516 323 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 PPP1R7Q15435 360 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 ELF2Q15723 593 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 SLC1A5Q15758 541 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 KIAA1161Q6NSJ0 714 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 CCDC70Q6NSX1 233 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 RANBP10Q6VN20 620 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 PRR23BQ6ZRT6 265 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 WRAP53Q9BUR4 548 aaKnown RBP29.46■■■□□ 2.31
USP42-202ENST00000404008 LRRC40Q9H9A6 602 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 ZFR2Q9UPR6 939 aaKnown RBP29.46■■■□□ 2.31
USP42-202ENST00000404008 ZBTB32Q9Y2Y4 487 aaPredicted RBP29.46■■■□□ 2.31
USP42-202ENST00000404008 DOCK9Q9BZ29 2069 aa29.46■■■□□ 2.31
USP42-202ENST00000404008 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP29.45■■■□□ 2.31
USP42-202ENST00000404008 A0A1W2PQU0 124 aa29.45■■■□□ 2.31
USP42-202ENST00000404008 ERI2A8K979 691 aaKnown RBP29.45■■■□□ 2.31
USP42-202ENST00000404008 METTL12A8MUP2 240 aa29.45■■■□□ 2.31
USP42-202ENST00000404008 RHOBTB1O94844 696 aa29.45■■■□□ 2.31
USP42-202ENST00000404008 HLA-DPA1P20036 260 aa29.45■■■□□ 2.31
USP42-202ENST00000404008 VIPR1P32241 457 aa29.45■■■□□ 2.31
USP42-202ENST00000404008 CHRNA4P43681 627 aa29.45■■■□□ 2.31
USP42-202ENST00000404008 RPS21P63220 83 aaKnown RBP29.45■■■□□ 2.31
USP42-202ENST00000404008 SPARCL1Q14515 664 aa29.45■■■□□ 2.31
USP42-202ENST00000404008 TMEM259Q4ZIN3 620 aa29.45■■■□□ 2.31
USP42-202ENST00000404008 SYCP2LQ5T4T6 812 aa29.45■■■□□ 2.31
USP42-202ENST00000404008 HORMAD1Q86X24 394 aa29.45■■■□□ 2.31
USP42-202ENST00000404008 FOXJ1Q92949 421 aa29.45■■■□□ 2.31
USP42-202ENST00000404008 BIRC7Q96CA5 298 aa29.45■■■□□ 2.31
USP42-202ENST00000404008 LRRC45Q96CN5 670 aa29.45■■■□□ 2.31
USP42-202ENST00000404008 HSPA12BQ96MM6 686 aa29.45■■■□□ 2.31
USP42-202ENST00000404008 TBL1YQ9BQ87 522 aa29.45■■■□□ 2.31
USP42-202ENST00000404008 PLXNA2O75051 1894 aa29.45■■■□□ 2.3
USP42-202ENST00000404008 A8MX80 341 aa29.44■■■□□ 2.3
USP42-202ENST00000404008 LATO43561 262 aa29.44■■■□□ 2.3
USP42-202ENST00000404008 FSBPO95073 299 aa29.44■■■□□ 2.3
USP42-202ENST00000404008 CYP2A6P11509 494 aaPredicted RBP29.44■■■□□ 2.3
USP42-202ENST00000404008 PTGER3P43115 390 aa29.44■■■□□ 2.3
USP42-202ENST00000404008 PTK6Q13882 451 aa29.44■■■□□ 2.3
USP42-202ENST00000404008 DHX34Q14147 1143 aaKnown RBP29.44■■■□□ 2.3
USP42-202ENST00000404008 SEL1L3Q68CR1 1132 aa29.44■■■□□ 2.3
USP42-202ENST00000404008 SYDE1Q6ZW31 735 aaPredicted RBP29.44■■■□□ 2.3
USP42-202ENST00000404008 SLC25A41Q8N5S1 370 aa29.44■■■□□ 2.3
USP42-202ENST00000404008 CXorf40AQ8TE69 158 aa29.44■■■□□ 2.3
USP42-202ENST00000404008 LYSMD1Q96S90 227 aa29.44■■■□□ 2.3
USP42-202ENST00000404008 APOL2Q9BQE5 337 aa29.44■■■□□ 2.3
USP42-202ENST00000404008 FAM86C1Q9NVL1 165 aa29.44■■■□□ 2.3
USP42-202ENST00000404008 E7EVH7 732 aa29.43■■■□□ 2.3
USP42-202ENST00000404008 USP12O75317 370 aa29.43■■■□□ 2.3
USP42-202ENST00000404008 FGF1P05230 155 aa29.43■■■□□ 2.3
USP42-202ENST00000404008 LHCGRP22888 699 aa29.43■■■□□ 2.3
USP42-202ENST00000404008 NBL1P41271 181 aa29.43■■■□□ 2.3
USP42-202ENST00000404008 LIG3P49916 1009 aa29.43■■■□□ 2.3
USP42-202ENST00000404008 BASP1P80723 227 aaKnown RBP29.43■■■□□ 2.3
USP42-202ENST00000404008 ZNF284Q2VY69 593 aa29.43■■■□□ 2.3
USP42-202ENST00000404008 TSPAN33Q86UF1 283 aa29.43■■■□□ 2.3
USP42-202ENST00000404008 TPX2Q9ULW0 747 aaKnown RBP29.43■■■□□ 2.3
USP42-202ENST00000404008 TTI1O43156 1089 aa29.42■■■□□ 2.3
USP42-202ENST00000404008 MMP20O60882 483 aa29.42■■■□□ 2.3
USP42-202ENST00000404008 SUN1O94901 812 aa29.42■■■□□ 2.3
USP42-202ENST00000404008 APRTP07741 180 aa29.42■■■□□ 2.3
USP42-202ENST00000404008 MAT2AP31153 395 aaKnown RBP29.42■■■□□ 2.3
USP42-202ENST00000404008 LMAN1P49257 510 aa29.42■■■□□ 2.3
USP42-202ENST00000404008 CRTC1Q6UUV9 634 aa29.42■■■□□ 2.3
USP42-202ENST00000404008 LIPIQ6XZB0 460 aa29.42■■■□□ 2.3
USP42-202ENST00000404008 ARMCX6Q7L4S7 300 aa29.42■■■□□ 2.3
USP42-202ENST00000404008 JAMLQ86YT9 394 aa29.42■■■□□ 2.3
USP42-202ENST00000404008 CCHCR1Q8TD31 782 aa29.42■■■□□ 2.3
USP42-202ENST00000404008 ARNT2Q9HBZ2 717 aa29.42■■■□□ 2.3
USP42-202ENST00000404008 MAGEE1Q9HCI5 957 aa29.42■■■□□ 2.3
USP42-202ENST00000404008 EIF2B3Q9NR50 452 aaKnown RBP29.42■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms