RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 SLC23A3Q6PIS1 610 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 LINGO4Q6UY18 593 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 PCDH20Q8N6Y1 951 aaKnown RBP9.3□□□□□ -0.92
VPS53-203ENST00000401468 KIF18AQ8NI77 898 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 GANCQ8TET4 914 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 NANOS1Q8WY41 292 aaKnown RBP9.3□□□□□ -0.92
VPS53-203ENST00000401468 PRCCQ92733 491 aaPredicted RBP9.3□□□□□ -0.92
VPS53-203ENST00000401468 PTPRN2Q92932 1015 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 TADA1Q96BN2 335 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 HAUS1Q96CS2 278 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 VAT1Q99536 393 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 SPON2Q9BUD6 331 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 FBRSQ9HAH7 460 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 SP110Q9HB58 689 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 CAPN10Q9HC96 672 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 PRSS16Q9NQE7 514 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 WSB2Q9NYS7 404 aaPredicted RBP9.3□□□□□ -0.92
VPS53-203ENST00000401468 UBA2Q9UBT2 640 aaPredicted RBP9.3□□□□□ -0.92
VPS53-203ENST00000401468 ANGPTL2Q9UKU9 493 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 DNPEPQ9ULA0 475 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 PLA2G4CQ9UP65 541 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 NEU2Q9Y3R4 380 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 ACTL7AQ9Y615 435 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 EDDM13A0A1B0GTR0 161 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 A0A1B0GVT2 93 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 C5orf60A6NFR6 353 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 CCDC188H7C350 402 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 MUSKO15146 869 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 BNIP3LO60238 219 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 SH3BP5O60239 455 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 PHF2O75151 1096 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 SIN3BO75182 1162 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 FSBPO95073 299 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 SERPINF2P08697 491 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 FBXO45P0C2W1 286 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 ACADMP11310 421 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 PTPN3P26045 913 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 STIP1P31948 543 aaKnown RBP9.29□□□□□ -0.92
VPS53-203ENST00000401468 MMP13P45452 471 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 PSMD8P48556 350 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 FNTAP49354 379 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 RPS14P62263 151 aaKnown RBP9.29□□□□□ -0.92
VPS53-203ENST00000401468 SIM1P81133 766 aaPredicted RBP9.29□□□□□ -0.92
VPS53-203ENST00000401468 GRIK2Q13002 908 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 DLG2Q15700 870 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 TEX44Q53QW1 395 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 MARC1Q5VT66 337 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 TTC27Q6P3X3 843 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 SLC36A4Q6YBV0 504 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 C11orf74Q86VG3 221 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 ZC3H18Q86VM9 953 aaKnown RBP9.29□□□□□ -0.92
VPS53-203ENST00000401468 CDKL3Q8IVW4 592 aaPredicted RBP9.29□□□□□ -0.92
VPS53-203ENST00000401468 PGBD5Q8N414 524 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 CNTD1Q8N815 330 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 OR2AP1Q8NGE2 309 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 OR2A12Q8NGT7 310 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 HTR3CQ8WXA8 447 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 ATG4AQ8WYN0 398 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 FAM131CQ96AQ9 280 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 TEKT5Q96M29 485 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 FAM129BQ96TA1 746 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 SCNM1Q9BWG6 230 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 CPEB1Q9BZB8 566 aaKnown RBP9.29□□□□□ -0.92
VPS53-203ENST00000401468 ITM2CQ9NQX7 267 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 SMARCAL1Q9NZC9 954 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 USP36Q9P275 1121 aaKnown RBP9.29□□□□□ -0.92
VPS53-203ENST00000401468 SEPT3Q9UH03 358 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 PCYOX1Q9UHG3 505 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 KLK13Q9UKR3 277 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 TRHDEQ9UKU6 1024 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 SLC6A14Q9UN76 642 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 FNDC3AQ9Y2H6 1198 aaKnown RBP9.29□□□□□ -0.92
VPS53-203ENST00000401468 MRFAP1Q9Y605 127 aa9.29□□□□□ -0.92
VPS53-203ENST00000401468 HELZ2Q9BYK8 2649 aaKnown RBP9.29□□□□□ -0.92
VPS53-203ENST00000401468 COL5A1P20908 1838 aaPredicted RBP9.28□□□□□ -0.92
VPS53-203ENST00000401468 FREM2Q5SZK8 3169 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 A0A1W2PP55 124 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 KCNK1O00180 336 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 KRIT1O00522 736 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 MID1O15344 667 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 OPHN1O60890 802 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 ZNF217O75362 1048 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 GCATO75600 419 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 HLA-DQB2P05538 268 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 CD59P13987 128 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 CES1P23141 567 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 RBL1P28749 1068 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 CHRNA3P32297 505 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 CD68P34810 354 aaPredicted RBP9.28□□□□□ -0.92
VPS53-203ENST00000401468 NNMTP40261 264 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 RGRP47804 291 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 GDF10P55107 478 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 CLDN6P56747 220 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 ST8SIA6P61647 398 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 AP1B1Q10567 949 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 ELAVL3Q14576 367 aaKnown RBP9.28□□□□□ -0.92
VPS53-203ENST00000401468 IHHQ14623 411 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 WHAMMP3Q1A5X7 153 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 P3H1Q32P28 736 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 CARD16Q5EG05 197 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms