RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ERGIC3Q9Y282 383 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 MEIS2O14770 477 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 GRIN3BO60391 1043 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 TGDSO95455 350 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 RPL7AP62424 266 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 ULK3Q6PHR2 472 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 ZNF557Q8N988 423 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 DENND6BQ8NEG7 585 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 NKX2-3Q8TAU0 364 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 S100PBPQ96BU1 408 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 ACAT2Q9BWD1 397 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 SMPD4Q9NXE4 827 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 DPP7Q9UHL4 492 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 ANGPT4Q9Y264 503 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 UBIAD1Q9Y5Z9 338 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 OR6B1O95007 311 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 OTCP00480 354 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 CST1P01037 141 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 NTRK1P04629 796 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 SLC26A3P40879 764 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 MAPK8P45983 427 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 RTP1P59025 263 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 APOBEC3HQ6NTF7 200 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 POTEHQ6S545 545 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 PIGZQ86VD9 579 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 PROSER1Q86XN7 944 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 TMEM139Q8IV31 216 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 NELL1Q92832 810 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 PGLYRP2Q96PD5 576 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 KPNA5O15131 536 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 PCDH8O95206 1070 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 IFNA16P05015 189 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 RAB2AP61019 212 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 TRIM32Q13049 653 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 HIPK1Q86Z02 1210 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 TBC1D21Q8IYX1 336 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 GSTCDQ8NEC7 633 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 OR8H1Q8NGG4 311 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 CD101Q93033 1021 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 COG5Q9UP83 839 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 GPC6Q9Y625 555 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 DEPDC5O75140 1603 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 ANKDD1BA6NHY2 528 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 SCGNO76038 276 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 SLC7A2P52569 658 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 SLC39A12Q504Y0 691 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 ZC3H12AQ5D1E8 599 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 PIK3C3Q8NEB9 887 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 ASB12Q8WXK4 309 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 PPP1R14AQ96A00 147 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 OMDQ99983 421 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 HOPXQ9BPY8 73 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 C2orf49Q9BVC5 232 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 SPATA5L1Q9BVQ7 753 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 GSDMCQ9BYG8 508 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 S100A14Q9HCY8 104 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 TDRKHQ9Y2W6 561 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 TRPV2Q9Y5S1 764 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 A0A088AWK7 358 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 TNNI3P19429 210 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 ZNF10P21506 573 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 BNIP1Q12981 228 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 ACOX1Q15067 660 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 SLC15A2Q16348 729 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 SMU1Q2TAY7 513 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 HYIQ5T013 277 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 EGFLAMQ63HQ2 1017 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 EFCAB3Q8N7B9 438 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 SLC44A1Q8WWI5 657 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 TMEM109Q9BVC6 243 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 MND1Q9BWT6 205 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 SLC17A7Q9P2U7 560 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 RAPGEFL1Q9UHV5 662 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 MAGEL2Q9UJ55 1249 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 PSME2Q9UL46 239 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 ZNF879B4DU55 563 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 UBA1P22314 1058 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 HIRAP54198 1017 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 RPL38P63173 70 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 SKP1P63208 163 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 CNTN2Q02246 1040 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 PTPRNQ16849 979 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 CYP20A1Q6UW02 462 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 ARMC8Q8IUR7 673 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 CCDC185Q8N715 623 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 ZFP28Q8NHY6 868 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 MRPL9Q9BYD2 267 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 RHOJQ9H4E5 214 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 ASB8Q9H765 288 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 LRRC4CQ9HCJ2 640 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 CMTM6Q9NX76 183 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 ZNF232Q9UNY5 417 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 TGFB1I1O43294 461 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 LYPLA1O75608 230 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 PRKAR1AP10644 381 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 ZNF37AP17032 561 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 ERCC2P18074 760 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 CXCR2P25025 360 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 CRHR1P34998 444 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 PSEN2P49810 448 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms