RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 PCDHGB2Q9Y5G2 931 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 GOLGA6CA6NDK9 693 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 GOLGA6BA6NDN3 693 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 LDB2O43679 373 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 GJB3O75712 270 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 C1SP09871 688 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 GOLGA6DP0CG33 693 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 CYP2A6P11509 494 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-202ENST00000394943 TGM1P22735 817 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 LHCGRP22888 699 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 SSR1P43307 286 aaKnown RBP7.04□□□□□ -1.28
LIMA1-202ENST00000394943 LIMK1P53667 647 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 ADARP55265 1226 aaKnown RBP7.04□□□□□ -1.28
LIMA1-202ENST00000394943 XIAPP98170 497 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 FGL2Q14314 439 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 SIRPB2Q5JXA9 342 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 ATXN7L2Q5T6C5 722 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-202ENST00000394943 LAIR1Q6GTX8 287 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 CRTC1Q6UUV9 634 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 ZDHHC24Q6UX98 284 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 LIPIQ6XZB0 460 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 HORMAD1Q86X24 394 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 JAMLQ86YT9 394 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 RASGRP3Q8IV61 690 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 SLC41A1Q8IVJ1 513 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 AGGF1Q8N302 714 aaeCLIP7.04□□□□□ -1.28
LIMA1-202ENST00000394943 BBOF1Q8ND07 529 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 BRSK1Q8TDC3 778 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 C1orf54Q8WWF1 131 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 TBL1YQ9BQ87 522 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 ADGRE3Q9BY15 652 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 ETNK1Q9HBU6 452 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 NLE1Q9NVX2 485 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-202ENST00000394943 GOLGA6AQ9NYA3 693 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 A0A1W2PPC4 97 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 FOXD2O60548 495 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-202ENST00000394943 SEC31AO94979 1220 aaKnown RBP7.04□□□□□ -1.28
LIMA1-202ENST00000394943 GSTM1P09488 218 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 ITIH2P19823 946 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 NFKBIAP25963 317 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 PSMB4P28070 264 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 CXCR5P32302 372 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 METAP1P53582 386 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 WNT3AP56704 352 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 YPEL5P62699 121 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 RPS21P63220 83 aaKnown RBP7.04□□□□□ -1.28
LIMA1-202ENST00000394943 GSTM4Q03013 218 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 ARMC12Q5T9G4 340 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 SLC23A3Q6PIS1 610 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 XKR5Q6UX68 686 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 NLRP9Q7RTR0 991 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 TMEM135Q86UB9 458 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 PPIL6Q8IXY8 311 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 FAM71DQ8N9W8 422 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 FOXJ1Q92949 421 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 DTD2Q96FN9 168 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 ERP44Q9BS26 406 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 SPON2Q9BUD6 331 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 TNKS2Q9H2K2 1166 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 MFSD1Q9H3U5 465 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 CAPN10Q9HC96 672 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 LATS2Q9NRM7 1088 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 SPATA6Q9NWH7 488 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-202ENST00000394943 IL17CQ9P0M4 197 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 BPTFQ12830 3046 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 MAGEB16A2A368 324 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 PIGNO95427 931 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 ECEL1O95672 775 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 DNTTP04053 509 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 CD27P26842 260 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 CNGA3Q16281 694 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 NAPEPLDQ6IQ20 393 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 PACS1Q6VY07 963 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 SDR16C5Q8N3Y7 309 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 TRIM44Q96DX7 344 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-202ENST00000394943 KLHL32Q96NJ5 620 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 WDR83Q9BRX9 315 aaKnown RBP7.04□□□□□ -1.28
LIMA1-202ENST00000394943 EBF2Q9HAK2 575 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 PCDH12Q9NPG4 1184 aa7.04□□□□□ -1.28
LIMA1-202ENST00000394943 CNOT6Q9ULM6 557 aaKnown RBP7.04□□□□□ -1.28
LIMA1-202ENST00000394943 H7C0C1 242 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 KCNK1O00180 336 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 RHOBTB1O94844 696 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 KRT14P02533 472 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 HNF1BP35680 557 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 GJC1P36383 396 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 CD86P42081 329 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 PAFAH1B1P43034 410 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 ATP5OP48047 213 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 DYNLT1P63172 113 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 PRPSAP1Q14558 356 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 USP39Q53GS9 565 aaKnown RBP7.03□□□□□ -1.28
LIMA1-202ENST00000394943 CCNJLQ8IV13 435 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 ZCCHC9Q8N567 271 aaKnown RBP7.03□□□□□ -1.28
LIMA1-202ENST00000394943 CCDC33Q8N5R6 958 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 MAGOHBQ96A72 148 aaKnown RBP7.03□□□□□ -1.28
LIMA1-202ENST00000394943 SPACA7Q96KW9 195 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 SIGLEC10Q96LC7 697 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 XAB2Q9HCS7 855 aaKnown RBP7.03□□□□□ -1.28
LIMA1-202ENST00000394943 RSPH14Q9UHP6 348 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms