RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 MYO5CQ9NQX4 1742 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 RFXANKO14593 260 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 LRATO95237 230 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 GNA12Q03113 381 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 C15orf59Q2T9L4 293 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 CCNYL2Q5T2Q4 361 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 STXBP5Q5T5C0 1151 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 ANGEL2Q5VTE6 544 aaKnown RBP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 GPRIN3Q6ZVF9 776 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 MAGEB10Q96LZ2 347 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 FNDC11Q9BVV2 318 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 AZIN1O14977 448 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 NDUFS2O75306 463 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 H6PDO95479 791 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 FTH1P02794 183 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 CSF1RP07333 972 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 MBL2P11226 248 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 PSKH1P11801 424 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 SLC6A3Q01959 620 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 PPIL2Q13356 520 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 HMBOX1Q6NT76 420 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 RASAL3Q86YV0 1011 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 DEFB106AQ8N104 65 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 RAB2BQ8WUD1 216 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 ITCHQ96J02 903 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 FRMD6Q96NE9 622 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 CUEDC1Q9NWM3 386 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 VPS4AQ9UN37 437 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 GIT1Q9Y2X7 761 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 PCDHGA4Q9Y5G9 962 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 BBIP1A8MTZ0 92 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 KCNU1A8MYU2 1149 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 PGLSO95336 258 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 VTNP04004 478 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 MINDY2Q8NBR6 621 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 OR2T12Q8NG77 320 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 ACAT2Q9BWD1 397 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 COQ10BQ9H8M1 238 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 MAGEE1Q9HCI5 957 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 CHMP1AQ9HD42 196 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 SLC28A1O00337 649 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 ULK1O75385 1050 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 HOXB8P17481 243 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 BMP6P22004 513 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 NRG1Q02297 640 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 PGAM4Q8N0Y7 254 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 LRRN4Q8WUT4 740 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 EFCAB6Q5THR3 1501 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 MOXD2PA6NHM9 499 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 E5RJQ4 531 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 APOL3O95236 402 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 TGDSO95455 350 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 HERC3Q15034 1050 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 TMEM119Q4V9L6 283 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 MFSD5Q6N075 450 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 CLYBLQ8N0X4 340 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 ZNF615Q8N8J6 731 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 VAT1Q99536 393 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 CCDC3Q9BQI4 270 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 CNPPD1Q9BV87 410 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 SLC6A15Q9H2J7 730 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 ERVK-5Q9HDB9 667 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 TLR8Q9NR97 1041 aaKnown RBP11.88□□□□□ -0.51
SYNPO-202ENST00000394243 MAPTP10636 758 aaKnown RBP11.88□□□□□ -0.51
SYNPO-202ENST00000394243 OCLNQ16625 522 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 TIGD2Q4W5G0 525 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 CLIP4Q8N3C7 705 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 PDE10AQ9Y233 779 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 TRAF6Q9Y4K3 522 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 QRICH2Q9H0J4 1663 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 DGKAP23743 735 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 CLCN5P51795 746 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 MYBPC1Q00872 1141 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 CMC1Q7Z7K0 106 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 SP8Q8IXZ3 490 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 OR52K2Q8NGK3 314 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 CLHC1Q8NHS4 586 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 PANX3Q96QZ0 392 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 C12orf65Q9H3J6 166 aaKnown RBP11.88□□□□□ -0.51
SYNPO-202ENST00000394243 A8MX80 341 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 SMIM22K7EJ46 135 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 SUPT20HL2P0C7V6 817 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 NR2F1P10589 423 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 CCNB1P14635 433 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 EIF4BP23588 611 aaKnown RBP11.88□□□□□ -0.51
SYNPO-202ENST00000394243 RPL4P36578 427 aaKnown RBP11.88□□□□□ -0.51
SYNPO-202ENST00000394243 ARF3P61204 181 aaPredicted RBP11.88□□□□□ -0.51
SYNPO-202ENST00000394243 ARF1P84077 181 aaKnown RBP11.88□□□□□ -0.51
SYNPO-202ENST00000394243 CD83Q01151 205 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 ELP6Q0PNE2 266 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 SEC23AQ15436 765 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 NADK2Q4G0N4 442 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 RALGPS1Q5JS13 557 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 VWA5B1Q5TIE3 1220 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 FEM1AQ9BSK4 669 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 ACSS2Q9NR19 701 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 REXO2Q9Y3B8 237 aaKnown RBP11.88□□□□□ -0.51
SYNPO-202ENST00000394243 PDLIM1O00151 329 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms