RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 GPR180Q86V85 440 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 RBFAQ8N0V3 343 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 PPCDCQ96CD2 204 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 HSFY1Q96LI6 401 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 GAD1Q99259 594 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 ABCB10Q9NRK6 738 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 TMPRSS4Q9NRS4 437 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.84□□□□□ -0.357e-6■■■■■ 33.6
CCDC88C-204ENST00000389857 RAP2CQ9Y3L5 183 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 ATXN2Q99700 1313 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 PLOD3O60568 738 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 LRIG2O94898 1065 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 PGK1P00558 417 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 CYP1A2P05177 515 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 ABHD2P08910 425 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 CTNNB1P35222 781 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 MYBPC3Q14896 1274 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 BICRALQ6AI39 1079 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 WDR59Q6PJI9 974 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 SLC4A11Q8NBS3 891 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 TRAPPC12Q8WVT3 735 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 PIH1D2Q8WWB5 315 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 KCNE2Q9Y6J6 123 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 H3BQF6 201 aa12.83□□□□□ -0.35
CCDC88C-204ENST00000389857 DBTP11182 482 aaKnown RBP12.83□□□□□ -0.35
CCDC88C-204ENST00000389857 CNSTQ6PJW8 725 aa12.83□□□□□ -0.35
CCDC88C-204ENST00000389857 NPNTQ6UXI9 565 aa12.83□□□□□ -0.35
CCDC88C-204ENST00000389857 ATCAYQ86WG3 371 aa12.83□□□□□ -0.35
CCDC88C-204ENST00000389857 RHOBTB2Q9BYZ6 727 aa12.83□□□□□ -0.35
CCDC88C-204ENST00000389857 C8orf4Q9NR00 106 aa12.83□□□□□ -0.35
CCDC88C-204ENST00000389857 RWDD3Q9Y3V2 267 aa12.83□□□□□ -0.35
CCDC88C-204ENST00000389857 NWD1Q149M9 1564 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 FAM86C2PA6NEL3 165 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 FAM86B1E9PN63 330 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 DDX3XO00571 662 aaKnown RBP eCLIP12.83□□□□□ -0.364e-7■■■■□ 26.5
CCDC88C-204ENST00000389857 CHST10O43529 356 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 CELF3Q5SZQ8 465 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 LRRC38Q5VT99 294 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 SPESP1Q6UW49 350 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 TCAIMQ8N3R3 496 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 PIK3C3Q8NEB9 887 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 TRIM39Q9HCM9 518 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 PNPLA3Q9NST1 481 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 MGAT4AQ9UM21 535 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 DHRS7Q9Y394 339 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 ZNF879B4DU55 563 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 LIASO43766 372 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 SCN2BO60939 215 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 ADH1AP07327 375 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 FAM153BP0C7A2 387 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 OLR1P78380 273 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 HSF2Q03933 536 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 FAM153CQ494X1 144 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 C5orf22Q49AR2 442 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 DNAAF5Q86Y56 855 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 SFRP1Q8N474 314 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 OR52E6Q96RD3 313 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 ZNF670Q9BS34 389 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 MYPNQ86TC9 1320 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 SERPINA6P08185 405 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 RIPK1Q13546 671 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 PDK3Q15120 406 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 POM121L1PQ3SYA9 428 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 PIK3R6Q5UE93 754 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 F8VP50 259 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 H0Y858 1186 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 UGT2B11O75310 529 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 MANFP55145 182 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 NT5DC1Q5TFE4 455 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 PSMA8Q8TAA3 256 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 NDNQ99608 321 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 CCDC177Q9NQR7 707 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 A0A087X0B3 334 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 KELP23276 732 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 IL12AP29459 219 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 LLGL2Q6P1M3 1020 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 BEND5Q7L4P6 421 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 TMC8Q8IU68 726 aa12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 BEND7Q8N7W2 519 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 WDR12Q9GZL7 423 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-204ENST00000389857 A0A1W2PQ72 361 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 TEX46H3BTG2 121 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 FGBP02675 491 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 ADCYAP1R1P41586 468 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 NR1H2P55055 460 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 NOMO2Q5JPE7 1267 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 TMPRSS11AQ6ZMR5 421 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 PIWIL4Q7Z3Z4 852 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 OR4L1Q8NH43 312 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 OR10G6Q8NH81 332 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 NEUROD4Q9HD90 331 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 TRPS1Q9UHF7 1281 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 SYNPO2Q9UMS6 1093 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 TRIM17Q9Y577 477 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 MRPL42Q9Y6G3 142 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 BBIP1A8MTZ0 92 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 TOP3BO95985 862 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 PTPN5P54829 565 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 SUZ12Q15022 739 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 TAPT1Q6NXT6 567 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms