RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 HM13Q8TCT9 377 aa13.93□□□□□ -0.18
SDC1-202ENST00000381150 CENPIQ92674 756 aaPredicted RBP13.93□□□□□ -0.18
SDC1-202ENST00000381150 HNRNPABQ99729 332 aaKnown RBP13.93□□□□□ -0.18
SDC1-202ENST00000381150 ATXN3LQ9H3M9 355 aa13.93□□□□□ -0.18
SDC1-202ENST00000381150 NXF3Q9H4D5 531 aaKnown RBP13.93□□□□□ -0.18
SDC1-202ENST00000381150 MTMR10Q9NXD2 777 aa13.93□□□□□ -0.18
SDC1-202ENST00000381150 DSEQ9UL01 958 aa13.93□□□□□ -0.18
SDC1-202ENST00000381150 PADI4Q9UM07 663 aa13.93□□□□□ -0.18
SDC1-202ENST00000381150 TRIP12Q14669 1992 aaPredicted RBP13.92□□□□□ -0.18
SDC1-202ENST00000381150 DHRS12A0PJE2 317 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 PARNO95453 639 aaKnown RBP13.92□□□□□ -0.18
SDC1-202ENST00000381150 SNAP29O95721 258 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 MATN1P21941 496 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 FASP25445 335 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 SLC7A1P30825 629 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 IL1RL1Q01638 556 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 PPP1R8Q12972 351 aaKnown RBP13.92□□□□□ -0.18
SDC1-202ENST00000381150 SEMA5AQ13591 1074 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 FAM83EQ2M2I3 478 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 ANKRD26P1Q6NSI1 321 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 UNC93AQ86WB7 457 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 DENND6AQ8IWF6 608 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 TMEM40Q8WWA1 233 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 ELMO2Q96JJ3 720 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 KCTD15Q96SI1 283 aaPredicted RBP13.92□□□□□ -0.18
SDC1-202ENST00000381150 OSMRQ99650 979 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 FAM49AQ9H0Q0 323 aaPredicted RBP13.92□□□□□ -0.18
SDC1-202ENST00000381150 UNC93B1Q9H1C4 597 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 NOL6Q9H6R4 1146 aaKnown RBP13.92□□□□□ -0.18
SDC1-202ENST00000381150 ATAD3AQ9NVI7 634 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 ATP11BQ9Y2G3 1177 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 TMEM114B3SHH9 223 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 AP3B1O00203 1094 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 MDM4O15151 490 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 DLX3O60479 287 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 F2P00734 622 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 SMIM10L2AP0DMW4 78 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 SMIM10L2BP0DMW5 78 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 DARSP14868 501 aaKnown RBP13.92□□□□□ -0.18
SDC1-202ENST00000381150 PSMA4P25789 261 aaKnown RBP13.92□□□□□ -0.18
SDC1-202ENST00000381150 POU6F1Q14863 301 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 VPS26BQ4G0F5 336 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 NHSL2Q5HYW2 709 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 DDIASQ8IXT1 998 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 CRYBG2Q8N1P7 616 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 TNIP2Q8NFZ5 429 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 TFAP2CQ92754 450 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 HDAC11Q96DB2 347 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 GTF2IRD1Q9UHL9 959 aa13.92□□□□□ -0.18
SDC1-202ENST00000381150 BMP10O95393 424 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 LMO2P25791 158 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 CDH13P55290 713 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 TUBA4AP68366 448 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 MPP1Q00013 466 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 NFATC3Q12968 1075 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 SLC12A1Q13621 1099 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 FBXO48Q5FWF7 155 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 XKR4Q5GH76 650 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 ABRAXAS1Q6UWZ7 409 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 CATSPER4Q7RTX7 472 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 IGFN1Q86VF2 1251 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 ZNF567Q8N184 647 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 CLEC4FQ8N1N0 589 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 TBCBQ99426 244 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 ANKRD60Q9BZ19 345 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 MARCH7Q9H992 704 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 SIAEQ9HAT2 523 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 SMIM35A0A1B0GVV1 85 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 XYLBO75191 536 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 SNRPB2P08579 225 aaKnown RBP13.91□□□□□ -0.18
SDC1-202ENST00000381150 POLD3Q15054 466 aaPredicted RBP13.91□□□□□ -0.18
SDC1-202ENST00000381150 PRAMEF19Q5SWL8 479 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 NOTUMQ6P988 496 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 PLEKHH3Q7Z736 793 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 HEATR4Q86WZ0 1026 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 KIAA2013Q8IYS2 634 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 SGCDQ92629 289 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 ACOT9Q9Y305 439 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 FAM32AQ9Y421 112 aaKnown RBP13.91□□□□□ -0.18
SDC1-202ENST00000381150 NRCAMQ92823 1304 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 ZNF236Q9UL36 1845 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 ZNF487B1APH4 448 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 RECQL4O94761 1208 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 SUPT7LO94864 414 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 AKAP5P24588 427 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 NMBRP28336 390 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 MAGEA6P43360 314 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 GJA9P57773 515 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 SAMD4BQ5PRF9 694 aaKnown RBP13.91□□□□□ -0.18
SDC1-202ENST00000381150 CNTD1Q8N815 330 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 OR2T34Q8NGX1 318 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 OR2T3Q8NH03 318 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 HTRA1Q92743 480 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 FTHL17Q9BXU8 183 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 RNF39Q9H2S5 420 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 ZNF408Q9H9D4 720 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 WDR70Q9NW82 654 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 NCKIPSDQ9NZQ3 722 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 POU2F3Q9UKI9 436 aa13.91□□□□□ -0.18
SDC1-202ENST00000381150 SMIM28A0A1B0GU29 152 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms