RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 MUC3BQ9H195 1237 aa16.46■□□□□ 0.23
SDC4-201ENST00000372733 MYBPHLA2RUH7 354 aa16.46■□□□□ 0.22
SDC4-201ENST00000372733 XPOTO43592 962 aaKnown RBP16.46■□□□□ 0.22
SDC4-201ENST00000372733 LTA4HP09960 611 aaKnown RBP16.46■□□□□ 0.22
SDC4-201ENST00000372733 KCNE1P15382 129 aa16.46■□□□□ 0.22
SDC4-201ENST00000372733 CXCR3P49682 368 aa16.46■□□□□ 0.22
SDC4-201ENST00000372733 YBX1P67809 324 aaKnown RBP16.46■□□□□ 0.22
SDC4-201ENST00000372733 AGAP9Q5VTM2 703 aa16.46■□□□□ 0.22
SDC4-201ENST00000372733 KIAA0930Q6ICG6 404 aaPredicted RBP16.46■□□□□ 0.22
SDC4-201ENST00000372733 GPR180Q86V85 440 aa16.46■□□□□ 0.22
SDC4-201ENST00000372733 SPPL2CQ8IUH8 684 aa16.46■□□□□ 0.22
SDC4-201ENST00000372733 ARHGAP12Q8IWW6 846 aa16.46■□□□□ 0.22
SDC4-201ENST00000372733 RBM12BQ8IXT5 1001 aaKnown RBP16.46■□□□□ 0.22
SDC4-201ENST00000372733 BBS5Q8N3I7 341 aa16.46■□□□□ 0.22
SDC4-201ENST00000372733 SHCBP1Q8NEM2 672 aa16.46■□□□□ 0.22
SDC4-201ENST00000372733 GFM2Q969S9 779 aaKnown RBP16.46■□□□□ 0.22
SDC4-201ENST00000372733 PGAP3Q96FM1 320 aaPredicted RBP16.46■□□□□ 0.22
SDC4-201ENST00000372733 SLC45A3Q96JT2 553 aa16.46■□□□□ 0.22
SDC4-201ENST00000372733 ADI1Q9BV57 179 aa16.46■□□□□ 0.22
SDC4-201ENST00000372733 OSBPL6Q9BZF3 934 aa16.46■□□□□ 0.22
SDC4-201ENST00000372733 TRIM8Q9BZR9 551 aa16.46■□□□□ 0.22
SDC4-201ENST00000372733 CNGB3Q9NQW8 809 aa16.46■□□□□ 0.22
SDC4-201ENST00000372733 ARMC1Q9NVT9 282 aa16.46■□□□□ 0.22
SDC4-201ENST00000372733 A0A087WXM4 84 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 ANXA9O76027 345 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 HLA-DQB2P05538 268 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 ESRRGP62508 458 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 PPIL2Q13356 520 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 CAPRIN1Q14444 709 aaKnown RBP16.45■□□□□ 0.22
SDC4-201ENST00000372733 PCSK7Q16549 785 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 KIF19Q2TAC6 998 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 HACD2Q6Y1H2 254 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 LARP4Q71RC2 724 aaKnown RBP eCLIP16.45■□□□□ 0.227e-13■□□□□ 9.5
SDC4-201ENST00000372733 ZNF554Q86TJ5 538 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 EXT2Q93063 718 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 PCED1BQ96HM7 432 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 ALG9Q9H6U8 611 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.45■□□□□ 0.22
SDC4-201ENST00000372733 NEU3Q9UQ49 428 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 FNDC1Q4ZHG4 1894 aaPredicted RBP16.45■□□□□ 0.22
SDC4-201ENST00000372733 DHRS12A0PJE2 317 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 MMP3P08254 477 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 PAMP19021 973 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 CHRM3P20309 590 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 OXTRP30559 389 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 ADRA1AP35348 466 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 NUP107P57740 925 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 STX1BP61266 288 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 ANKDD1AQ495B1 522 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 ZBED5Q49AG3 693 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 PM20D1Q6GTS8 502 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 ELMSAN1Q6PJG2 1045 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 ERO1BQ86YB8 467 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 KLHL23Q8NBE8 558 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 TRPC4APQ8TEL6 797 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 CCDC126Q96EE4 140 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 C19orf60Q96EN9 201 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 FBXL20Q96IG2 436 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 ZFP42Q96MM3 310 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 PLGRKTQ9HBL7 147 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 VPS45Q9NRW7 570 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 CCM2LQ9NUG4 571 aaPredicted RBP16.45■□□□□ 0.22
SDC4-201ENST00000372733 MRGBPQ9NV56 204 aa16.45■□□□□ 0.22
SDC4-201ENST00000372733 ZNF236Q9UL36 1845 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 SUPT7LO94864 414 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 ZBTB7AO95365 584 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 GPX3P22352 226 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 UBXN11Q5T124 520 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 ACBD5Q5T8D3 534 aaPredicted RBP16.44■□□□□ 0.22
SDC4-201ENST00000372733 DCLRE1AQ6PJP8 1040 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 LDB1Q86U70 411 aaPredicted RBP16.44■□□□□ 0.22
SDC4-201ENST00000372733 MFSD2AQ8NA29 543 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 SH3RF2Q8TEC5 729 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 VTA1Q9NP79 307 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 A0A0J9YYE9 177 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 TRIM64CA6NLI5 447 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 CCL22O00626 93 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 GABRDO14764 452 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 ATE1O95260 518 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 CAPN3P20807 821 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 MYF6P23409 242 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 KCNC1P48547 511 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 CDH13P55290 713 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 VPS26BQ4G0F5 336 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 OFCC1Q8IZS5 231 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 CYGBQ8WWM9 190 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 EMID1Q96A84 441 aaPredicted RBP16.44■□□□□ 0.22
SDC4-201ENST00000372733 MRGPRX2Q96LB1 330 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.44■□□□□ 0.22
SDC4-201ENST00000372733 MAP10Q9P2G4 905 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 DSEQ9UL01 958 aa16.44■□□□□ 0.22
SDC4-201ENST00000372733 SH3PXD2BA1X283 911 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 TFPTP0C1Z6 253 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 CCNCP24863 283 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 GEMP55040 296 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 XKR4Q5GH76 650 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 PIM3Q86V86 326 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 TNIP2Q8NFZ5 429 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 PLEKHG4BQ96PX9 1271 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 IL12RB2Q99665 862 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms