RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TRIM69Q86WT6 500 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 WDR49Q8IV35 697 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ST7LQ8TDW4 575 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 MYO19Q96H55 970 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 LMLNQ96KR4 655 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ZNF518BQ9C0D4 1074 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 REXO4Q9GZR2 422 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 SEMA6BQ9H3T3 888 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 METTL7AQ9H8H3 244 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ACTR8Q9H981 624 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ELL3Q9HB65 397 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 CHST11Q9NPF2 352 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 FAM207AQ9NSI2 230 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 ADPRHL2Q9NX46 363 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 NDE1Q9NXR1 346 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ZNF226Q9NYT6 803 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 LRCH1Q9Y2L9 728 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ZNF451Q9Y4E5 1061 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 USP15Q9Y4E8 981 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 CPQQ9Y646 472 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 CEMIPQ8WUJ3 1361 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 HEPACAM2A8MVW5 462 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 E9PMD0 336 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 TSPAN6O43657 245 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 NR3C1P04150 777 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 DCKP27707 260 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 CHI3L1P36222 383 aaPredicted RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 EPHA4P54764 986 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 AP1S1P61966 158 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 RPS21P63220 83 aaKnown RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 SPEM2Q0P670 501 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 RFX8Q6ZV50 586 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 UNC13DQ70J99 1090 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 R3HCC1LQ7Z5L2 792 aaKnown RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 CRLF3Q8IUI8 442 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 TOP6BLQ8N6T0 577 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 SPC24Q8NBT2 197 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 ELMO1Q92556 727 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 RHBDF1Q96CC6 855 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 LRRC39Q96DD0 335 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 ZNF354BQ96LW1 612 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 VAT1Q99536 393 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 CHID1Q9BWS9 393 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 LGR4Q9BXB1 951 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 ACTRT3Q9BYD9 372 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 ADAM19Q9H013 955 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 KCNK13Q9HB14 408 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 CXXC1Q9P0U4 656 aaPredicted RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 PADI1Q9ULC6 663 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 TMCO1Q9UM00 188 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 COLQQ9Y215 455 aaPredicted RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 FKBP7Q9Y680 259 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 LRRC7Q96NW7 1537 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 SPTA1P02549 2419 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 F5H423 210 aaPredicted RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 H0Y3Z8 333 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 TRIM38O00635 465 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 UBFD1O14562 309 aaKnown RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 KCNK3O14649 394 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 TGM5O43548 720 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 B4GALT2O60909 372 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 KAT7O95251 611 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 SERPINA1P01009 418 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 NR1D1P20393 614 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 CD82P27701 267 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 NOS3P29474 1203 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 MAT2AP31153 395 aaKnown RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 MNDAP41218 407 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 RGS7P49802 495 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 MAP3K7CLP57077 242 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 SNX1Q13596 522 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 NSDHLQ15738 373 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 FAM180BQ6P0A1 224 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 INTS5Q6P9B9 1019 aaKnown RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 ZCCHC9Q8N567 271 aaKnown RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 LRRC52Q8N7C0 313 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 IPMKQ8NFU5 416 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 MDM1Q8TC05 714 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 IPCEF1Q8WWN9 437 aaPredicted RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 SGCDQ92629 289 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 AP2M1Q96CW1 435 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 COPS8Q99627 209 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 CCM2Q9BSQ5 444 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.11□□□□□ -1.75
USH2A-202ENST00000366942 BARHL1Q9BZE3 327 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 GAREM1Q9H706 876 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 HMGXB4Q9UGU5 601 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 MCTS1Q9ULC4 181 aaKnown RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 TRIM33Q9UPN9 1127 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 EMC9Q9Y3B6 208 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 YIPF1Q9Y548 306 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 EP300Q09472 2414 aaPredicted RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 GMNCA6NCL1 334 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 LRIT2A6NDA9 550 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 SOWAHBA6NEL2 793 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 MUSKO15146 869 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 RFPL3O75679 317 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 HRGP04196 525 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 POU2F2P09086 479 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 IQCF3P0C7M6 154 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms