RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 PRAMEP78395 509 aa15.51■□□□□ 0.07
UPF3B-202ENST00000345865 DUSP4Q13115 394 aa15.51■□□□□ 0.07
UPF3B-202ENST00000345865 GALNT3Q14435 633 aa15.51■□□□□ 0.07
UPF3B-202ENST00000345865 SEMA3AQ14563 771 aa15.51■□□□□ 0.07
UPF3B-202ENST00000345865 SFT2D3Q587I9 215 aa15.51■□□□□ 0.07
UPF3B-202ENST00000345865 TAS1R1Q7RTX1 841 aa15.51■□□□□ 0.07
UPF3B-202ENST00000345865 ISCA2Q86U28 154 aa15.51■□□□□ 0.07
UPF3B-202ENST00000345865 PELI3Q8N2H9 469 aa15.51■□□□□ 0.07
UPF3B-202ENST00000345865 SPPL2BQ8TCT7 592 aa15.51■□□□□ 0.07
UPF3B-202ENST00000345865 DNAJC1Q96KC8 554 aaKnown RBP15.51■□□□□ 0.07
UPF3B-202ENST00000345865 CASD1Q96PB1 797 aa15.51■□□□□ 0.07
UPF3B-202ENST00000345865 TMEM161AQ9NX61 479 aa15.51■□□□□ 0.07
UPF3B-202ENST00000345865 STK39Q9UEW8 545 aa15.51■□□□□ 0.07
UPF3B-202ENST00000345865 SUFUQ9UMX1 484 aa15.51■□□□□ 0.07
UPF3B-202ENST00000345865 OR6C75A6NL08 312 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 UBFD1O14562 309 aaKnown RBP15.5■□□□□ 0.07
UPF3B-202ENST00000345865 SLC22A2O15244 555 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 TLR5O60602 858 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 PRAMEF11O60813 436 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 NBNO60934 754 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 PEX2P28328 305 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 SLC6A4P31645 630 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 SLC11A1P49279 550 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 KPNA2P52292 529 aaKnown RBP15.5■□□□□ 0.07
UPF3B-202ENST00000345865 PKNOX1P55347 436 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 CEACAM7Q14002 265 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 PPP1R3AQ16821 1122 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 ZNF423Q2M1K9 1284 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 PARP15Q460N3 678 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 PIGGQ5H8A4 983 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 GALNT7Q86SF2 657 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 RNF148Q8N7C7 305 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 PHC3Q8NDX5 983 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 OR13C4Q8NGS5 318 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 BLOC1S5Q8TDH9 187 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 PTERQ96BW5 349 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 ALG9Q9H6U8 611 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 PDFQ9HBH1 243 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 OLA1Q9NTK5 396 aaKnown RBP15.5■□□□□ 0.07
UPF3B-202ENST00000345865 ENPP3O14638 875 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 TBC1D4O60343 1298 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 RTN3O95197 1032 aaPredicted RBP15.5■□□□□ 0.07
UPF3B-202ENST00000345865 ZDHHC11BP0C7U3 371 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 PRSS56P0CW18 603 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 XRCC1P18887 633 aaPredicted RBP15.5■□□□□ 0.07
UPF3B-202ENST00000345865 TSPAN8P19075 237 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 ADSLP30566 484 aaPredicted RBP15.5■□□□□ 0.07
UPF3B-202ENST00000345865 GPR17Q13304 367 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 ACAP2Q15057 778 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 ARMC3Q5W041 872 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 OR52E8Q6IFG1 317 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 CYHR1Q6ZMK1 362 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 CUZD1Q86UP6 607 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 USP13Q92995 863 aaPredicted RBP15.5■□□□□ 0.07
UPF3B-202ENST00000345865 NPAS2Q99743 824 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 EBF3Q9H4W6 596 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 GSTO2Q9H4Y5 243 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 DONSONQ9NYP3 566 aa15.5■□□□□ 0.07
UPF3B-202ENST00000345865 A0A1W2PQ45 241 aaPredicted RBP15.49■□□□□ 0.07
UPF3B-202ENST00000345865 A0A1W2PQY0 241 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 GOT2P00505 430 aaKnown RBP15.49■□□□□ 0.07
UPF3B-202ENST00000345865 ENO3P13929 434 aaPredicted RBP15.49■□□□□ 0.07
UPF3B-202ENST00000345865 ATF6P18850 670 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 TACR2P21452 398 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 MS4A2Q01362 244 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 ACVR1Q04771 509 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 TCTN1Q2MV58 587 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 C16orf89Q6UX73 402 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 PDSS2Q86YH6 399 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 SLC43A3Q8NBI5 491 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 DBF4BQ8NFT6 615 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 CEP70Q8NHQ1 597 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 TSPAN17Q96FV3 270 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 POLR1EQ9GZS1 481 aaKnown RBP15.49■□□□□ 0.07
UPF3B-202ENST00000345865 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.49■□□□□ 0.07
UPF3B-202ENST00000345865 POLR3BQ9NW08 1133 aaPredicted RBP15.49■□□□□ 0.07
UPF3B-202ENST00000345865 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.49■□□□□ 0.07
UPF3B-202ENST00000345865 PRPF19Q9UMS4 504 aaKnown RBP15.49■□□□□ 0.07
UPF3B-202ENST00000345865 CCDC189A1A4V9 331 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 CCDC162PA2VCL2 907 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 TRPC5OSA6NMA1 111 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 CFLARO15519 480 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 SLC4A1P02730 911 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 RBP1P09455 135 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 UBTFL6P0CB48 400 aaPredicted RBP15.49■□□□□ 0.07
UPF3B-202ENST00000345865 HOXD9P28356 352 aaPredicted RBP15.49■□□□□ 0.07
UPF3B-202ENST00000345865 SP3Q02447 781 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 RING1Q06587 406 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 HERC3Q15034 1050 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 KLC3Q6P597 504 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 BNC2Q6ZN30 1099 aaPredicted RBP15.49■□□□□ 0.07
UPF3B-202ENST00000345865 GK5Q6ZS86 529 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 CHSY3Q70JA7 882 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 LGI2Q8N0V4 545 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 GDPD5Q8WTR4 605 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 SPATA17Q96L03 361 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 DDX50Q9BQ39 737 aaKnown RBP15.49■□□□□ 0.07
UPF3B-202ENST00000345865 WDR41Q9HAD4 459 aa15.49■□□□□ 0.07
UPF3B-202ENST00000345865 MKI67P46013 3256 aaKnown RBP15.48■□□□□ 0.07
UPF3B-202ENST00000345865 ADAM12O43184 909 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms