RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 CRIPAKQ8N1N5 446 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.15□□□□□ -0.35e-7■■■□□ 16.8
COL18A1-201ENST00000342220 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.15□□□□□ -0.31e-12■■■■□ 20.4
COL18A1-201ENST00000342220 SORCS1Q8WY21 1168 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 E2F7Q96AV8 911 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 UBA2Q9UBT2 640 aaPredicted RBP13.15□□□□□ -0.3
COL18A1-201ENST00000342220 CLEC4EQ9ULY5 219 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 GMEB1Q9Y692 573 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 COMMD10Q9Y6G5 202 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.15□□□□□ -0.3
COL18A1-201ENST00000342220 PGM1P36871 562 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 BMPR1AP36894 532 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 ARL1P40616 181 aaPredicted RBP13.14□□□□□ -0.31
COL18A1-201ENST00000342220 CCR2P41597 374 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 AIF1P55008 147 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 SLC12A2P55011 1212 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 CSE1LP55060 971 aaKnown RBP13.14□□□□□ -0.31
COL18A1-201ENST00000342220 MPP1Q00013 466 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 NIPAL4Q0D2K0 466 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 KCNMB4Q86W47 210 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 BBS5Q8N3I7 341 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 GRIN3AQ8TCU5 1115 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 WFDC5Q8TCV5 224 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 C20orf27Q9GZN8 174 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 FAM192AQ9GZU8 254 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 FAM96AQ9H5X1 160 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 LRRC40Q9H9A6 602 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 WDR37Q9Y2I8 494 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 KLF11O14901 512 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 MUSKO15146 869 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 ANXA9O76027 345 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 CTSAP10619 480 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 KCNA4P22459 653 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 STK19P49842 368 aaPredicted RBP13.14□□□□□ -0.31
COL18A1-201ENST00000342220 ADGRF1Q5T601 910 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 TPGS2Q68CL5 300 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 NCCRP1Q6ZVX7 275 aaPredicted RBP13.14□□□□□ -0.31
COL18A1-201ENST00000342220 CCDC80Q76M96 950 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 LZTR1Q8N653 840 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 SCG3Q8WXD2 468 aaKnown RBP13.14□□□□□ -0.31
COL18A1-201ENST00000342220 SPATA16Q9BXB7 569 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 MTG2Q9H4K7 406 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 MAGEA13PA6NCF6 341 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 MTSS1O43312 755 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 TBC1D4O60343 1298 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 PRSS56P0CW18 603 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 CCDC166P0CW27 439 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 PRKCHP24723 683 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 PMLP29590 882 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 CSKP41240 450 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 RGRP47804 291 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 GPM6BQ13491 265 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 USP10Q14694 798 aaKnown RBP13.14□□□□□ -0.31
COL18A1-201ENST00000342220 TIGD7Q6NT04 549 aaPredicted RBP13.14□□□□□ -0.31
COL18A1-201ENST00000342220 NUDCD3Q8IVD9 361 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 PDZD8Q8NEN9 1154 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 ZNF689Q96CS4 500 aaPredicted RBP13.14□□□□□ -0.31
COL18A1-201ENST00000342220 CERS2Q96G23 380 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 BBS2Q9BXC9 721 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 SLC46A2Q9BY10 475 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 TRHDEQ9UKU6 1024 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 AAR2Q9Y312 384 aaKnown RBP13.14□□□□□ -0.31
COL18A1-201ENST00000342220 PCDHB9Q9Y5E1 797 aa13.14□□□□□ -0.31
COL18A1-201ENST00000342220 LINC01553A4QN01 128 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 TPP1O14773 563 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 IL1BP01584 269 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 IGLV3-25P01717 112 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 CCNCP24863 283 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 RFC2P35250 354 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 VIPR2P41587 438 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 AQP5P55064 265 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 PLOD1Q02809 727 aaPredicted RBP13.13□□□□□ -0.31
COL18A1-201ENST00000342220 KDSRQ06136 332 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 LRRC8BQ6P9F7 803 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 PPHLN1Q8NEY8 458 aaKnown RBP13.13□□□□□ -0.31
COL18A1-201ENST00000342220 STMN2Q93045 179 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 CLPTM1LQ96KA5 538 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 SPATA17Q96L03 361 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 PRICKLE1Q96MT3 831 aaPredicted RBP13.13□□□□□ -0.31
COL18A1-201ENST00000342220 KCNK4Q9NYG8 393 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 ZNF180Q9UJW8 692 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 ARL5AQ9Y689 179 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 WASF2Q9Y6W5 498 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 HMX2A2RU54 273 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 GPR39O43194 453 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 ABLIM3O94929 683 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 GEMP55040 296 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 SLC34A1Q06495 639 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 SMARCB1Q12824 385 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 ANKRD20A4Q4UJ75 823 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 FBXO48Q5FWF7 155 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 PSRC1Q6PGN9 363 aaPredicted RBP13.13□□□□□ -0.31
COL18A1-201ENST00000342220 LRRC74BQ6ZQY2 392 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 GET4Q7L5D6 327 aaPredicted RBP13.13□□□□□ -0.31
COL18A1-201ENST00000342220 RTP4Q96DX8 246 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 SCUBE2Q9NQ36 999 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 ABCB8Q9NUT2 735 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 PDP2Q9P2J9 529 aa13.13□□□□□ -0.31
COL18A1-201ENST00000342220 EVLQ9UI08 416 aaPredicted RBP13.13□□□□□ -0.31
COL18A1-201ENST00000342220 TRAV19A0A0A6YYK7 116 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms