RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 LY6G5CQ5SRR4 150 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 MMAAQ8IVH4 418 aaKnown RBP10.2□□□□□ -0.78
USP54-201ENST00000339859 SLC41A1Q8IVJ1 513 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 SLC2A11Q9BYW1 496 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 ADAM7Q9H2U9 754 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 TRIT1Q9H3H1 467 aaKnown RBP10.2□□□□□ -0.78
USP54-201ENST00000339859 KCND1Q9NSA2 647 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 NCDNQ9UBB6 729 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 POLG2Q9UHN1 485 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 ANKRD31Q8N7Z5 1873 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 DDX3YO15523 660 aaKnown RBP10.2□□□□□ -0.78
USP54-201ENST00000339859 HOXD13P35453 343 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 SERPINB4P48594 390 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 PTPRNQ16849 979 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 ATP6AP1LQ52LC2 224 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 IMP3Q9NV31 184 aaKnown RBP10.2□□□□□ -0.78
USP54-201ENST00000339859 HPGDP15428 266 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 MDH1P40925 334 aaKnown RBP10.19□□□□□ -0.78
USP54-201ENST00000339859 CDC16Q13042 620 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 PDCD2Q16342 344 aaPredicted RBP10.19□□□□□ -0.78
USP54-201ENST00000339859 PGS1Q32NB8 556 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 ATXN7L2Q5T6C5 722 aaPredicted RBP10.19□□□□□ -0.78
USP54-201ENST00000339859 TCAIMQ8N3R3 496 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 CAVIN3Q969G5 261 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 C1orf74Q96LT6 269 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 SLC2A4RGQ9NR83 387 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 TMEM248Q9NWD8 314 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 KLQ9UEF7 1012 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 FAM32AQ9Y421 112 aaKnown RBP10.19□□□□□ -0.78
USP54-201ENST00000339859 SLC31A1O15431 190 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 HCRTO43612 131 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 HOXD8P13378 290 aaPredicted RBP10.19□□□□□ -0.78
USP54-201ENST00000339859 ATP6V0D1P61421 351 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 RING1Q06587 406 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 MGAT3Q09327 533 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 FOXD4Q12950 439 aaPredicted RBP10.19□□□□□ -0.78
USP54-201ENST00000339859 XKR4Q5GH76 650 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 ADAMTSL2Q86TH1 951 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 MRPL43Q8N983 215 aaKnown RBP10.19□□□□□ -0.78
USP54-201ENST00000339859 JADE3Q92613 823 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 HDAC10Q969S8 669 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 GDF3Q9NR23 364 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 HSFX1Q9UBD0 423 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 PIPSLA2A3N6 862 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 SYNDIG1LA6NDD5 238 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 SGTAO43765 313 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 SRPRAP08240 638 aaKnown RBP10.19□□□□□ -0.78
USP54-201ENST00000339859 EPCAMP16422 314 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 MAT2AP31153 395 aaKnown RBP10.19□□□□□ -0.78
USP54-201ENST00000339859 VIPR1P32241 457 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 TXNDC11Q6PKC3 985 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 OLFML1Q6UWY5 402 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 DCAF4L2Q8NA75 395 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 EBNA1BP2Q99848 306 aaKnown RBP10.19□□□□□ -0.78
USP54-201ENST00000339859 CDH19Q9H159 772 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 KRCC1Q9NPI7 259 aaPredicted RBP10.19□□□□□ -0.78
USP54-201ENST00000339859 FBXL12Q9NXK8 326 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 SNX6Q9UNH7 406 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 RGS14O43566 566 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 AP2A1O95782 977 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 HPCAL1P37235 193 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 DNAJC3Q13217 504 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 PITRM1Q5JRX3 1037 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 N4BP2L1Q5TBK1 243 aaPredicted RBP10.19□□□□□ -0.78
USP54-201ENST00000339859 ZC3H14Q6PJT7 736 aaKnown RBP10.19□□□□□ -0.78
USP54-201ENST00000339859 TAGAPQ8N103 731 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 CEP70Q8NHQ1 597 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 NELL2Q99435 816 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 PAAF1Q9BRP4 392 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 RUBCNLQ9H714 662 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 MARCOQ9UEW3 520 aaPredicted RBP10.19□□□□□ -0.78
USP54-201ENST00000339859 CD84Q9UIB8 345 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 RFPL2O75678 378 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 CFHP08603 1231 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 RUNX3Q13761 415 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 INPP5AQ14642 412 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 MYLK3Q32MK0 819 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 SEL1L3Q68CR1 1132 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 ZBTB2Q8N680 514 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 OR4K2Q8NGD2 314 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 APOPT1Q96IL0 206 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 TUBGCP5Q96RT8 1024 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 POMKQ9H5K3 350 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 ARMC7Q9H6L4 198 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 MAP10Q9P2G4 905 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 LIMD1Q9UGP4 676 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 COG5Q9UP83 839 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 MAPRE3Q9UPY8 281 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 ARL2BPQ9Y2Y0 163 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 KAT6AQ92794 2004 aa10.19□□□□□ -0.78
USP54-201ENST00000339859 ZNF840PA6NDX5 716 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 POLD2P49005 469 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 SESN3P58005 492 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 PPP4R4Q6NUP7 873 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 FAM162AQ96A26 154 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 PRICKLE1Q96MT3 831 aaPredicted RBP10.18□□□□□ -0.78
USP54-201ENST00000339859 HGH1Q9BTY7 390 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 SSC5DA1L4H1 1573 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 CDK14O94921 469 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 SSTR1P30872 391 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms