RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ADGRD1Q6QNK2 874 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 C16orf89Q6UX73 402 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 RBM23Q86U06 439 aaKnown RBP6.89□□□□□ -1.31
SF3B1-201ENST00000335508 UBR7Q8N806 425 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 ZMIZ2Q8NF64 920 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 TRMT2BQ96GJ1 504 aaKnown RBP6.89□□□□□ -1.31
SF3B1-201ENST00000335508 NSL1Q96IY1 281 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 IL12RB2Q99665 862 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 ZDHHC6Q9H6R6 413 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 NPHS2Q9NP85 383 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 ADA2Q9NZK5 511 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 RIMKLBQ9ULI2 386 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 SLC27A6Q9Y2P4 619 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 TXNDC9O14530 226 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 SNX3O60493 162 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 ATG13O75143 517 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 SYF2O95926 243 aaKnown RBP6.89□□□□□ -1.31
SF3B1-201ENST00000335508 TBX18O95935 607 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 ABL2P42684 1182 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 PTGIRP43119 386 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 KCNQ1P51787 676 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 ELAVL3Q14576 367 aaKnown RBP6.89□□□□□ -1.31
SF3B1-201ENST00000335508 INPP5AQ14642 412 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 NAA25Q14CX7 972 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 ITPRIPL2Q3MIP1 535 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 LHX8Q68G74 356 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 EXOC3L1Q86VI1 746 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 CLYBLQ8N0X4 340 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 TCAIMQ8N3R3 496 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 MFSD3Q96ES6 412 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 SFXN1Q9H9B4 322 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 ITM2CQ9NQX7 267 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 SAR1AQ9NR31 198 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 TMEM248Q9NWD8 314 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 RAP2CQ9Y3L5 183 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 LOC100653049A0A140TA62 436 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 NEDD8-MDP1E9PL57 170 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 PRAMEF11O60813 436 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 KRT34O76011 436 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 LBPP18428 481 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 SMAD1Q15797 465 aaKnown RBP6.89□□□□□ -1.31
SF3B1-201ENST00000335508 KRT80Q6KB66 452 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 RRM2BQ7LG56 351 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 WDTC1Q8N5D0 677 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 MDM1Q8TC05 714 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 GRIN3AQ8TCU5 1115 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 SHDQ96IW2 340 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 SUV39H2Q9H5I1 410 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 POLMQ9NP87 494 aaPredicted RBP6.89□□□□□ -1.31
SF3B1-201ENST00000335508 ABCF3Q9NUQ8 709 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 XPR1Q9UBH6 696 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 DNAJC16Q9Y2G8 782 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 PCDHGC4Q9Y5F7 938 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 HS3ST4Q9Y661 456 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 CD3EAPO15446 510 aaKnown RBP6.89□□□□□ -1.31
SF3B1-201ENST00000335508 PLIN3O60664 434 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 PIGNO95427 931 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 CXCL10P02778 98 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 ERVK-10P10266 1014 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 IDSP22304 550 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 ATXN3P54252 364 aaPredicted RBP6.89□□□□□ -1.31
SF3B1-201ENST00000335508 AQP5P55064 265 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 WDR5P61964 334 aaKnown RBP6.89□□□□□ -1.31
SF3B1-201ENST00000335508 GRAMD1BQ3KR37 738 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 LY6G5CQ5SRR4 150 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 PIK3R6Q5UE93 754 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 C1orf53Q5VUE5 145 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 MBLAC2Q68D91 279 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 TPRG1Q6ZUI0 275 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 PQLC3Q8N755 202 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 SMARCD2Q92925 531 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 FAM161BQ96MY7 647 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 ZNF641Q96N77 438 aaPredicted RBP6.89□□□□□ -1.31
SF3B1-201ENST00000335508 SH3GL2Q99962 352 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 RUBCNLQ9H714 662 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 HEY2Q9UBP5 337 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 EVLQ9UI08 416 aaPredicted RBP6.89□□□□□ -1.31
SF3B1-201ENST00000335508 PRR23AA6NEV1 266 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 NBNO60934 754 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 STK16O75716 305 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 OTCP00480 354 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 ALOX15P16050 662 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 RPL14P50914 215 aaKnown RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 ECT2LQ008S8 904 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 SLC10A7Q0GE19 358 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 DAB2IPQ5VWQ8 1189 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 CFAP52Q8N1V2 620 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 NCLNQ969V3 563 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 RAB7BQ96AH8 199 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 SIGLEC10Q96LC7 697 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 TTLL2Q9BWV7 592 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 GLYATL1P3A0A0U1RQE8 302 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 CCDC195A0A1B0GUA6 201 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 CD48P09326 243 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 CNPP09543 421 aaKnown RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 CALB2P22676 271 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 NDUFS1P28331 727 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 HOXC8P31273 242 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 PKNOX1P55347 436 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 TAS2R39P59534 338 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms