RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 PFKPQ01813 784 aa17.49■□□□□ 0.39
COL9A1-201ENST00000320755 MON1AQ86VX9 555 aa17.49■□□□□ 0.39
COL9A1-201ENST00000320755 GALNT15Q8N3T1 639 aa17.49■□□□□ 0.39
COL9A1-201ENST00000320755 HMGCLL1Q8TB92 370 aa17.49■□□□□ 0.39
COL9A1-201ENST00000320755 SPATA16Q9BXB7 569 aa17.49■□□□□ 0.39
COL9A1-201ENST00000320755 FNDC3AQ9Y2H6 1198 aaKnown RBP17.49■□□□□ 0.39
COL9A1-201ENST00000320755 ACTL7AQ9Y615 435 aa17.49■□□□□ 0.39
COL9A1-201ENST00000320755 AP4B1Q9Y6B7 739 aa17.49■□□□□ 0.39
COL9A1-201ENST00000320755 ZNF236Q9UL36 1845 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 CRTAMO95727 393 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 RBP1P09455 135 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 PRSS56P0CW18 603 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 ACVRL1P37023 503 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 LEPRP48357 1165 aaKnown RBP17.48■□□□□ 0.39
COL9A1-201ENST00000320755 CLCN5P51795 746 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 XIAPP98170 497 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 KCNA10Q16322 511 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 C10orf120Q5SQS8 335 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 FBXL22Q6P050 247 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 UGT2A3Q6UWM9 527 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 NUP93Q8N1F7 819 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 SEMA3CQ99985 751 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 MRM3Q9HC36 420 aaKnown RBP17.48■□□□□ 0.39
COL9A1-201ENST00000320755 BCAP29Q9UHQ4 241 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 BCAS2O75934 225 aaPredicted RBP17.48■□□□□ 0.39
COL9A1-201ENST00000320755 KIAA0408Q6ZU52 694 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 CFAP52Q8N1V2 620 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 PGBD5Q8N414 524 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 AFAP1L2Q8N4X5 818 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 MAELQ96JY0 434 aaKnown RBP17.48■□□□□ 0.39
COL9A1-201ENST00000320755 RIMS3Q9UJD0 308 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 PCDHGA7Q9Y5G6 932 aa17.48■□□□□ 0.39
COL9A1-201ENST00000320755 CCDC160A6NGH7 325 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 FBP2O00757 339 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 S1PR4O95977 384 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 MMP2P08253 660 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 RAB27AP51159 221 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 DNAJB13P59910 316 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 AFMIDQ63HM1 303 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 SCML4Q8N228 414 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 TRIB2Q92519 343 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 TSPAN17Q96FV3 270 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 DNAJC1Q96KC8 554 aaKnown RBP17.47■□□□□ 0.39
COL9A1-201ENST00000320755 GABRQQ9UN88 632 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 TLR6Q9Y2C9 796 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 PEX1O43933 1283 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 ADSLP30566 484 aaPredicted RBP17.47■□□□□ 0.39
COL9A1-201ENST00000320755 HERC3Q15034 1050 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 POLD3Q15054 466 aaPredicted RBP17.47■□□□□ 0.39
COL9A1-201ENST00000320755 KIF19Q2TAC6 998 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 REP15Q6BDI9 236 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 TTC16Q8NEE8 873 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 KLHDC9Q8NEP7 349 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 OR13C4Q8NGS5 318 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 UPF1Q92900 1129 aaKnown RBP eCLIP17.47■□□□□ 0.39
COL9A1-201ENST00000320755 EME1Q96AY2 570 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 PTERQ96BW5 349 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 C3orf30Q96M34 536 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 BTBD9Q96Q07 612 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 EPS15L1Q9UBC2 864 aa17.47■□□□□ 0.39
COL9A1-201ENST00000320755 TRIM38O00635 465 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 ACOT8O14734 319 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 SLC22A2O15244 555 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 OR1E1P30953 314 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 SOX11P35716 441 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 STX5Q13190 355 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 CWF19L1Q69YN2 538 aaKnown RBP17.46■□□□□ 0.39
COL9A1-201ENST00000320755 ZFP1Q6P2D0 407 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 BEND5Q7L4P6 421 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 ISCA2Q86U28 154 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 UMODL1-AS1Q8N2C9 162 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 PELI3Q8N2H9 469 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 NMD3Q96D46 503 aaKnown RBP17.46■□□□□ 0.39
COL9A1-201ENST00000320755 SLC45A3Q96JT2 553 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 CACNA2D2Q9NY47 1150 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 SLC12A8A0AV02 714 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 UBA6A0AVT1 1052 aaPredicted RBP17.46■□□□□ 0.39
COL9A1-201ENST00000320755 KPNA6O60684 536 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 RHOQP17081 205 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 CDKL1Q00532 357 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 ROR2Q01974 943 aaKnown RBP17.46■□□□□ 0.39
COL9A1-201ENST00000320755 IRF5Q13568 498 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 ACAP2Q15057 778 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 PFKFB4Q16877 469 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 GLB1LQ6UWU2 654 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 AMIGO2Q86SJ2 522 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 SOCS4Q8WXH5 440 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 LPGAT1Q92604 370 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 MYEOVQ96EZ4 313 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 UBXN10Q96LJ8 280 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 PPP1R2P1Q96PQ5 205 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 GSTO2Q9H4Y5 243 aa17.46■□□□□ 0.39
COL9A1-201ENST00000320755 TDRD15B5MCY1 1934 aaKnown RBP17.46■□□□□ 0.39
COL9A1-201ENST00000320755 PRORSD1PA6NEY8 169 aa17.46■□□□□ 0.38
COL9A1-201ENST00000320755 MRASO14807 208 aa17.46■□□□□ 0.38
COL9A1-201ENST00000320755 RAMP2O60895 175 aa17.46■□□□□ 0.38
COL9A1-201ENST00000320755 NELFEP18615 380 aaKnown RBP17.46■□□□□ 0.38
COL9A1-201ENST00000320755 DSC3Q14574 896 aa17.46■□□□□ 0.38
COL9A1-201ENST00000320755 GABPB2Q8TAK5 448 aaPredicted RBP17.46■□□□□ 0.38
COL9A1-201ENST00000320755 FBXO32Q969P5 355 aa17.46■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms