RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 EDEM1Q92611 657 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 PHF21BQ96EK2 531 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 LRCH3Q96II8 777 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 FICDQ9BVA6 458 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 NAA50Q9GZZ1 169 aaKnown RBP13.51□□□□□ -0.25
SKA3-202ENST00000314759 WDCPQ9H6R7 721 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 SMOXQ9NWM0 555 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 FBXO5Q9UKT4 447 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 POLR2AP24928 1970 aaKnown RBP13.51□□□□□ -0.25
SKA3-202ENST00000314759 A0A1W2PPW3 197 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 UBFD1O14562 309 aaKnown RBP13.51□□□□□ -0.25
SKA3-202ENST00000314759 ADAM23O75077 832 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 CPB1P15086 417 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 BAG6P46379 1132 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 SLC12A2P55011 1212 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 POU4F1Q01851 419 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 FAM83EQ2M2I3 478 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 FGD3Q5JSP0 725 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 WSCD1Q658N2 575 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 CLEC6AQ6EIG7 209 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 RETREG3Q86VR2 466 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 CBR4Q8N4T8 237 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 PPHLN1Q8NEY8 458 aaKnown RBP13.51□□□□□ -0.25
SKA3-202ENST00000314759 PPP1R13LQ8WUF5 828 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 PGAP3Q96FM1 320 aaPredicted RBP13.51□□□□□ -0.25
SKA3-202ENST00000314759 TCF12Q99081 682 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 OLFM1Q99784 485 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 ELP3Q9H9T3 547 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 VPS45Q9NRW7 570 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 TMEM30AQ9NV96 361 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 WDR37Q9Y2I8 494 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 TCAF1Q9Y4C2 921 aa13.51□□□□□ -0.25
SKA3-202ENST00000314759 TRIM64CA6NLI5 447 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 ZBTB11O95625 1053 aaPredicted RBP13.5□□□□□ -0.25
SKA3-202ENST00000314759 CLIC3O95833 236 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 UGT1A6P19224 532 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 ADCYAP1R1P41586 468 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 KPNA2P52292 529 aaKnown RBP13.5□□□□□ -0.25
SKA3-202ENST00000314759 OXCT1P55809 520 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 GPR107Q5VW38 600 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 HACD2Q6Y1H2 254 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 DCDC5Q6ZRR9 648 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 KDELC2Q7Z4H8 507 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 EPHX4Q8IUS5 362 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 AFAP1L2Q8N4X5 818 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 PNPLA1Q8N8W4 532 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 TBC1D15Q8TC07 691 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 THAP11Q96EK4 314 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 TSGA13Q96PP4 275 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 UPF3AQ9H1J1 476 aaKnown RBP13.5□□□□□ -0.25
SKA3-202ENST00000314759 TREX1Q9NSU2 369 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.5□□□□□ -0.25
SKA3-202ENST00000314759 TRAF6Q9Y4K3 522 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 TANC1Q9C0D5 1861 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.5□□□□□ -0.25
SKA3-202ENST00000314759 DFFAO00273 331 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 CAPN15O75808 1086 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 HSPA8P11142 646 aaKnown RBP13.5□□□□□ -0.25
SKA3-202ENST00000314759 TSPAN8P19075 237 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 PMS2P3Q13401 168 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 IRAK1BP1Q5VVH5 260 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 LARP4Q71RC2 724 aaKnown RBP eCLIP13.5□□□□□ -0.25
SKA3-202ENST00000314759 TOP6BLQ8N6T0 577 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 PLEKHA8Q96JA3 519 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 VPS50Q96JG6 964 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 SMOQ99835 787 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 ATXN3LQ9H3M9 355 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 HIPK3Q9H422 1215 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 RPF2Q9H7B2 306 aaKnown RBP13.5□□□□□ -0.25
SKA3-202ENST00000314759 CCM2LQ9NUG4 571 aaPredicted RBP13.5□□□□□ -0.25
SKA3-202ENST00000314759 TBC1D23Q9NUY8 699 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 A0A087WXM4 84 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 FAM149AA5PLN7 773 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 H3BMQ9 156 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 J3QRK9 145 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 K7EPI3 171 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 OCM2P0CE71 109 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 OCMP0CE72 109 aaPredicted RBP13.5□□□□□ -0.25
SKA3-202ENST00000314759 CHRNA4P43681 627 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 ESRRGP62508 458 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 CD300CQ08708 224 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 ATP1A4Q13733 1029 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 PM20D1Q6GTS8 502 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 TTC33Q6PID6 262 aaPredicted RBP13.5□□□□□ -0.25
SKA3-202ENST00000314759 MFSD2AQ8NA29 543 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 SHCBP1Q8NEM2 672 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 TANKQ92844 425 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 FBXL8Q96CD0 374 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 CCDC126Q96EE4 140 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 C3orf30Q96M34 536 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 COG8Q96MW5 612 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 FCRL5Q96RD9 977 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 CXorf21Q9HAI6 301 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 SPON1Q9HCB6 807 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 CRTAC1Q9NQ79 661 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 TUBA8Q9NY65 449 aaPredicted RBP13.5□□□□□ -0.25
SKA3-202ENST00000314759 AURKCQ9UQB9 309 aa13.5□□□□□ -0.25
SKA3-202ENST00000314759 MTF2Q9Y483 593 aaPredicted RBP13.5□□□□□ -0.25
SKA3-202ENST00000314759 NME4O00746 187 aa13.49□□□□□ -0.25
SKA3-202ENST00000314759 ALDOCP09972 364 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms