RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 VAT1Q99536 393 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 EDEM2Q9BV94 578 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 TIPINQ9BVW5 301 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 POTEKPQ9BYX7 375 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 INO80BQ9C086 356 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 XPNPEP3Q9NQH7 507 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 GPATCH2LQ9NWQ4 482 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 LIMD1Q9UGP4 676 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 CCDC61Q9Y6R9 512 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 CLASP1Q7Z460 1538 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 A0A0G2JN53 185 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 H0Y858 1186 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 BTN3A1O00481 513 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 CLIC2O15247 247 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 SHOX2O60902 331 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 RPP40O75818 363 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 CBR3O75828 277 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ADAP00813 363 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC2A1P11166 492 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 CTPS1P17812 591 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 RPA1P27694 616 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 CHRNA5P30532 468 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 RPL23AP62750 156 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 MC2RQ01718 297 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ROR2Q01974 943 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 BCL2A1Q16548 175 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 TMEM41BQ5BJD5 291 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM69AQ5T7M9 428 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 TANGO2Q6ICL3 276 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 NXPE2Q96DL1 559 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 NOL4LQ96MY1 436 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 EYA3Q99504 573 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ZBTB3Q9H5J0 574 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 PIDD1Q9HB75 910 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 CDHR5Q9HBB8 845 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 SCUBE2Q9NQ36 999 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 GIN1Q9NXP7 522 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 HAO2Q9NYQ3 351 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 NDOR1Q9UHB4 597 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 IP6K2Q9UHH9 426 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ING1Q9UK53 422 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC39A10Q9ULF5 831 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 COPS3Q9UNS2 423 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 MAP3K2Q9Y2U5 619 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 LAD1O00515 517 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 NMT2O60551 498 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 STC2O76061 302 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 SNAP29O95721 258 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ADH1CP00326 375 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 SERPINA7P05543 415 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 CHRM3P20309 590 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 GNALP38405 381 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 HERVK_113P63132 956 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 NAA30Q147X3 362 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 CES4AQ5XG92 561 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ILDR2Q71H61 639 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ITIH5Q86UX2 942 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 IQCKQ8N0W5 287 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 LCORLQ8N3X6 602 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 MB21D1Q8N884 522 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 MRPS31Q92665 395 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 SNX21Q969T3 373 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 SERPINB11Q96P15 392 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 FCRL4Q96PJ5 515 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 INTS7Q9NVH2 962 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 CABP1Q9NZU7 370 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 RAPGEFL1Q9UHV5 662 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 KCNJ14Q9UNX9 436 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 PHLPP2Q6ZVD8 1323 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 LRRIQ1Q96JM4 1722 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 IMPA2O14732 288 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 NDUFB10O96000 172 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 OR52Z1P0C646 297 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 HNF1BP35680 557 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 OXCT1P55809 520 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 TMC3Q7Z5M5 1100 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 C8orf59Q8N0T1 100 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ECHDC3Q96DC8 303 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ITPKCQ96DU7 683 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ADGRG7Q96K78 797 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 MMP27Q9H306 513 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 PSMD13Q9UNM6 376 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 PIK3R4Q99570 1358 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 KLHL33A6NCF5 533 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 FPGTO14772 594 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 PDGFRAP16234 1089 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 AKT2P31751 481 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 CDK3Q00526 305 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 PPIGQ13427 754 aaKnown RBP eCLIP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF782Q6ZMW2 699 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 OR6B3Q8NGW1 331 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF431Q8TF32 576 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 SAMD11Q96NU1 681 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 LMBRD1Q9NUN5 540 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM86C1Q9NVL1 165 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 GMIPQ9P107 970 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 DLGAP4Q9Y2H0 992 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 LSM5Q9Y4Y9 91 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 YTHDF2Q9Y5A9 579 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 EHBP1L1Q8N3D4 1523 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms