RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 TCRBV7S3A2A0A539 114 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 OR6C75A6NL08 312 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 SYN3O14994 580 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 CKMT2P17540 419 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 PPM1AP35813 382 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 TCEAL1Q15170 157 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 DDR2Q16832 855 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 FGD3Q5JSP0 725 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 GPR180Q86V85 440 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 FAM131BQ86XD5 332 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 CCDC103Q8IW40 242 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 DEFB106AQ8N104 65 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.97□□□□□ -0.65
LSM3-201ENST00000306024 TDRD5Q8NAT2 981 aaKnown RBP10.97□□□□□ -0.65
LSM3-201ENST00000306024 BPIFB6Q8NFQ5 453 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 USP33Q8TEY7 942 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 TFB1MQ8WVM0 346 aaKnown RBP10.97□□□□□ -0.65
LSM3-201ENST00000306024 KBTBD7Q8WVZ9 684 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 LINC01599Q8WXQ3 324 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 NDRG1Q92597 394 aaKnown RBP10.97□□□□□ -0.65
LSM3-201ENST00000306024 MARK4Q96L34 752 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 TRIM62Q9BVG3 475 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 MRPL17Q9NRX2 175 aaKnown RBP10.97□□□□□ -0.65
LSM3-201ENST00000306024 ST14Q9Y5Y6 855 aa10.97□□□□□ -0.65
LSM3-201ENST00000306024 H3BNH8 94 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 TOP3BO95985 862 aaKnown RBP10.96□□□□□ -0.65
LSM3-201ENST00000306024 DHRS4L1P0CG22 281 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 SOX11P35716 441 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 ABCE1P61221 599 aaKnown RBP10.96□□□□□ -0.65
LSM3-201ENST00000306024 DEFB103AP81534 67 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 DPYSL3Q14195 570 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 C15orf59Q2T9L4 293 aaPredicted RBP10.96□□□□□ -0.65
LSM3-201ENST00000306024 UNC45BQ8IWX7 931 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 COLGALT2Q8IYK4 626 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 ADAM32Q8TC27 787 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 GPR152Q8TDT2 470 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 GIPC2Q8TF65 315 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 ZFYVE19Q96K21 471 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 ITM2BQ9Y287 266 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 hCG_1818297A0A087WSY0 165 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 CCDC162PA2VCL2 907 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 KRBA1A5PL33 1030 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 BMXP51813 675 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 TUBA4AP68366 448 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 DUSP4Q13115 394 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 DPYSQ14117 519 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 TAF5Q15542 800 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 KCNJ8Q15842 424 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 GEN1Q17RS7 908 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 IL23RQ5VWK5 629 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 ZDHHC17Q8IUH5 632 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 C10orf107Q8IVU9 208 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 GRIN3AQ8TCU5 1115 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 RHOBTB2Q9BYZ6 727 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 GPR62Q9BZJ7 368 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 ILKAPQ9H0C8 392 aaPredicted RBP10.96□□□□□ -0.65
LSM3-201ENST00000306024 GPATCH2LQ9NWQ4 482 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 COPG2Q9UBF2 871 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 NUDT5Q9UKK9 219 aa10.96□□□□□ -0.65
LSM3-201ENST00000306024 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.96□□□□□ -0.66
LSM3-201ENST00000306024 A8MU76 341 aa10.96□□□□□ -0.66
LSM3-201ENST00000306024 STX16-NPEPL1H3BU86 382 aa10.96□□□□□ -0.66
LSM3-201ENST00000306024 KCNH1O95259 989 aa10.96□□□□□ -0.66
LSM3-201ENST00000306024 HMBSP08397 361 aa10.96□□□□□ -0.66
LSM3-201ENST00000306024 ALOX5P09917 674 aa10.96□□□□□ -0.66
LSM3-201ENST00000306024 GDF10P55107 478 aa10.96□□□□□ -0.66
LSM3-201ENST00000306024 ZNF846Q147U1 533 aa10.96□□□□□ -0.66
LSM3-201ENST00000306024 XYLT1Q86Y38 959 aa10.96□□□□□ -0.66
LSM3-201ENST00000306024 SLC15A4Q8N697 577 aa10.96□□□□□ -0.66
LSM3-201ENST00000306024 UBR7Q8N806 425 aa10.96□□□□□ -0.66
LSM3-201ENST00000306024 ARPC5LQ9BPX5 153 aa10.96□□□□□ -0.66
LSM3-201ENST00000306024 WDR55Q9H6Y2 383 aaPredicted RBP10.96□□□□□ -0.66
LSM3-201ENST00000306024 COG4Q9H9E3 785 aa10.96□□□□□ -0.66
LSM3-201ENST00000306024 CRTAC1Q9NQ79 661 aa10.96□□□□□ -0.66
LSM3-201ENST00000306024 CDYLQ9Y232 598 aa10.96□□□□□ -0.66
LSM3-201ENST00000306024 TIPRLO75663 272 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 IGFBP6P24592 240 aaPredicted RBP10.95□□□□□ -0.66
LSM3-201ENST00000306024 EPHA3P29320 983 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 PRDX6P30041 224 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 RCVRNP35243 200 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 SERPINB10P48595 397 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 GLUD2P49448 558 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 SESN2P58004 480 aaPredicted RBP10.95□□□□□ -0.66
LSM3-201ENST00000306024 FAM189BP81408 668 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 TFDP2Q14188 446 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 SLC9A4Q6AI14 798 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 AKAP14Q86UN6 197 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 HERC6Q8IVU3 1022 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 ELMOD1Q8N336 334 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 AFAP1L2Q8N4X5 818 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 NEURL2Q9BR09 285 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 RNF38Q9H0F5 515 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.95□□□□□ -0.66
LSM3-201ENST00000306024 GTSE1Q9NYZ3 720 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 SIRPGQ9P1W8 387 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 PAK5Q9P286 719 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 USP18Q9UMW8 372 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 LRRC37A2A6NM11 1700 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 TMEM191CA6NGB0 347 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 CLDN25C9JDP6 229 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms