RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 IL7P13232 177 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 ASMTP46597 345 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 GALCP54803 685 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 DLGAP5Q15398 846 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 RPTNQ6XPR3 784 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 ELMOD1Q8N336 334 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 TRPM4Q8TD43 1214 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 SEC14L1Q92503 715 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 ASIC4Q96FT7 647 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 ZSCAN5AQ9BUG6 496 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 CYP3A43Q9HB55 503 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 NUDT15Q9NV35 164 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 FAM50BQ9Y247 325 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 INVSQ9Y283 1065 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 BTN3A1O00481 513 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 HDAC3O15379 428 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 CHMP24386 653 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 GRIA2P42262 883 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PPARDQ03181 441 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PSMD5Q16401 504 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 USP30Q70CQ3 517 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 ABI1Q8IZP0 508 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 FBXL16Q8N461 479 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 NATD1Q8N6N6 113 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 C12orf50Q8NA57 414 aaPredicted RBP4.86□□□□□ -1.63
CSMD3-201ENST00000297405 C8orf58Q8NAV2 365 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 BBS1Q8NFJ9 593 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 HSPA12BQ96MM6 686 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 TMEM109Q9BVC6 243 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 NLNQ9BYT8 704 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 UCK2Q9BZX2 261 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 SLC38A7Q9NVC3 462 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 SPASTQ9UBP0 616 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF639Q9UID6 485 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 CNOT11Q9UKZ1 510 aaKnown RBP4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PDE10AQ9Y233 779 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PTPRTO14522 1441 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 HTR3EA5X5Y0 456 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 DISC1C4P0D8 188 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PLIN3O60664 434 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 ADAP00813 363 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PGRP06401 933 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PRR29P0C7W0 189 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 ODC1P11926 461 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 UGT2B10P36537 528 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 SLC1A2P43004 574 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PSEN1P49768 467 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PERM1Q5SV97 790 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PAPD4Q6PIY7 484 aaKnown RBP4.86□□□□□ -1.63
CSMD3-201ENST00000297405 SERPINA13PQ6UXR4 307 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 KLHL6Q8WZ60 621 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 TSNAXQ99598 290 aaKnown RBP4.86□□□□□ -1.63
CSMD3-201ENST00000297405 EIF2AK1Q9BQI3 630 aaKnown RBP4.86□□□□□ -1.63
CSMD3-201ENST00000297405 MOSPD1Q9UJG1 213 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 TBC1D24Q9ULP9 559 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 ATG4BQ9Y4P1 393 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 SLIT1O75093 1534 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PRAMEF33A0A0G2JMD5 474 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PRAMEF10O60809 474 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 RDH16O75452 317 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 CSDE1O75534 798 aaKnown RBP4.86□□□□□ -1.63
CSMD3-201ENST00000297405 COL6A2P12110 1019 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 CDNFQ49AH0 187 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 DCAF6Q58WW2 860 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 OTUD3Q5T2D3 398 aaPredicted RBP4.86□□□□□ -1.63
CSMD3-201ENST00000297405 GPR107Q5VW38 600 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 FAM173BQ6P4H8 233 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 FAM228AQ86W67 206 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 DCP2Q8IU60 420 aaKnown RBP4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PLD6Q8N2A8 252 aaKnown RBP4.86□□□□□ -1.63
CSMD3-201ENST00000297405 OR7G2Q8NG99 324 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 CEP76Q8TAP6 659 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 DCAF4Q8WV16 495 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 SUCLG2Q96I99 432 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 MSTO1Q9BUK6 570 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 WDR26Q9H7D7 661 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 TRIM36Q9NQ86 728 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 TRPS1Q9UHF7 1281 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 AGRPO00253 132 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 BCKDKO14874 412 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 OIP5O43482 229 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 CFBP00751 764 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 GNAZP19086 355 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 GLRBP48167 497 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PTPN21Q16825 1174 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PUS10Q3MIT2 529 aaKnown RBP4.86□□□□□ -1.63
CSMD3-201ENST00000297405 METTL4Q8N3J2 472 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 SLC44A3Q8N4M1 653 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 OPA3Q9H6K4 179 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 ASB4Q9Y574 426 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 PREX1Q8TCU6 1659 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 USP42Q9H9J4 1324 aaKnown RBP4.86□□□□□ -1.63
CSMD3-201ENST00000297405 SYNJ2BP-COX16A0A087WUM0 186 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 ZSCAN5BA6NJL1 495 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 ATMINO43313 823 aaPredicted RBP4.86□□□□□ -1.63
CSMD3-201ENST00000297405 SCGNO76038 276 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 RAB8AP61006 207 aa4.86□□□□□ -1.63
CSMD3-201ENST00000297405 NSUN2Q08J23 767 aaKnown RBP eCLIP4.86□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF425Q6IV72 752 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms