RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 UBXN10Q96LJ8 280 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 POLR1EQ9GZS1 481 aaKnown RBP20.16■□□□□ 0.82
VPS53-201ENST00000291074 ALG9Q9H6U8 611 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 ADAM12O43184 909 aa20.15■□□□□ 0.82
VPS53-201ENST00000291074 ALDH2P05091 517 aa20.15■□□□□ 0.82
VPS53-201ENST00000291074 TSPAN8P19075 237 aa20.15■□□□□ 0.82
VPS53-201ENST00000291074 CYLC2Q14093 348 aaPredicted RBP20.15■□□□□ 0.82
VPS53-201ENST00000291074 SEMA3AQ14563 771 aa20.15■□□□□ 0.82
VPS53-201ENST00000291074 OR7D4Q8NG98 312 aa20.15■□□□□ 0.82
VPS53-201ENST00000291074 SPPL2BQ8TCT7 592 aa20.15■□□□□ 0.82
VPS53-201ENST00000291074 BCL7CQ8WUZ0 217 aaPredicted RBP20.15■□□□□ 0.82
VPS53-201ENST00000291074 CCDC28BQ9BUN5 200 aa20.15■□□□□ 0.82
VPS53-201ENST00000291074 IPO13O94829 963 aaKnown RBP20.15■□□□□ 0.82
VPS53-201ENST00000291074 MSX2P35548 267 aaPredicted RBP20.15■□□□□ 0.82
VPS53-201ENST00000291074 DHDDSQ86SQ9 333 aa20.15■□□□□ 0.82
VPS53-201ENST00000291074 TSPAN17Q96FV3 270 aa20.15■□□□□ 0.82
VPS53-201ENST00000291074 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.15■□□□□ 0.82
VPS53-201ENST00000291074 ADAMTS6Q9UKP5 1117 aa20.15■□□□□ 0.82
VPS53-201ENST00000291074 GOT2P00505 430 aaKnown RBP20.14■□□□□ 0.82
VPS53-201ENST00000291074 PRSS56P0CW18 603 aa20.14■□□□□ 0.82
VPS53-201ENST00000291074 TNK2Q07912 1038 aa20.14■□□□□ 0.82
VPS53-201ENST00000291074 CDC16Q13042 620 aa20.14■□□□□ 0.82
VPS53-201ENST00000291074 LPCAT4Q643R3 524 aa20.14■□□□□ 0.82
VPS53-201ENST00000291074 LHX8Q68G74 356 aa20.14■□□□□ 0.82
VPS53-201ENST00000291074 KYQ8NBH2 561 aa20.14■□□□□ 0.82
VPS53-201ENST00000291074 SLC43A3Q8NBI5 491 aa20.14■□□□□ 0.82
VPS53-201ENST00000291074 RP9Q8TA86 221 aaKnown RBP20.14■□□□□ 0.82
VPS53-201ENST00000291074 PDFQ9HBH1 243 aa20.14■□□□□ 0.82
VPS53-201ENST00000291074 ZBTB26Q9HCK0 441 aa20.14■□□□□ 0.82
VPS53-201ENST00000291074 DPPA5A6NC42 116 aa20.14■□□□□ 0.81
VPS53-201ENST00000291074 A6NHS1 94 aa20.14■□□□□ 0.81
VPS53-201ENST00000291074 SELPP16109 830 aa20.14■□□□□ 0.81
VPS53-201ENST00000291074 SLC14A2Q15849 920 aa20.14■□□□□ 0.81
VPS53-201ENST00000291074 IRGCQ6NXR0 463 aa20.14■□□□□ 0.81
VPS53-201ENST00000291074 KLC3Q6P597 504 aa20.14■□□□□ 0.81
VPS53-201ENST00000291074 ZNF549Q6P9A3 640 aa20.14■□□□□ 0.81
VPS53-201ENST00000291074 TMEM154Q6P9G4 183 aa20.14■□□□□ 0.81
VPS53-201ENST00000291074 RNF148Q8N7C7 305 aa20.14■□□□□ 0.81
VPS53-201ENST00000291074 USP13Q92995 863 aaPredicted RBP20.14■□□□□ 0.81
VPS53-201ENST00000291074 EXT2Q93063 718 aa20.14■□□□□ 0.81
VPS53-201ENST00000291074 SPATA17Q96L03 361 aa20.14■□□□□ 0.81
VPS53-201ENST00000291074 NSMCE3Q96MG7 304 aa20.14■□□□□ 0.81
VPS53-201ENST00000291074 CCDC162PA2VCL2 907 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 SLC38A8A6NNN8 435 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 F5H5T6 163 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 CFLARO15519 480 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 KIF1CO43896 1103 aaKnown RBP20.13■□□□□ 0.81
VPS53-201ENST00000291074 TBC1D4O60343 1298 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 ZDHHC11BP0C7U3 371 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 ENO3P13929 434 aaPredicted RBP20.13■□□□□ 0.81
VPS53-201ENST00000291074 RPL17P18621 184 aaKnown RBP20.13■□□□□ 0.81
VPS53-201ENST00000291074 SP100P23497 879 aaPredicted RBP20.13■□□□□ 0.81
VPS53-201ENST00000291074 THOP1P52888 689 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 PKNOX1P55347 436 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 C1QTNF8P60827 252 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 DSG1Q02413 1049 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 RING1Q06587 406 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 RAET1EQ8TD07 263 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 MAELQ96JY0 434 aaKnown RBP20.13■□□□□ 0.81
VPS53-201ENST00000291074 EXOC2Q96KP1 924 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 CDRT15Q96T59 188 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 ECSITQ9BQ95 431 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 SCN5AQ14524 2016 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 CCDC189A1A4V9 331 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 STX16-NPEPL1H3BU86 382 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 WISP3O95389 354 aaPredicted RBP20.13■□□□□ 0.81
VPS53-201ENST00000291074 RAG1P15918 1043 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 PAX7P23759 505 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 HOXD9P28356 352 aaPredicted RBP20.13■□□□□ 0.81
VPS53-201ENST00000291074 DPP6P42658 865 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 MAPKAPK2P49137 400 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 YBEYP58557 167 aaPredicted RBP20.13■□□□□ 0.81
VPS53-201ENST00000291074 MRPS35P82673 323 aaKnown RBP20.13■□□□□ 0.81
VPS53-201ENST00000291074 CUZD1Q86UP6 607 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 GABPB2Q8TAK5 448 aaPredicted RBP20.13■□□□□ 0.81
VPS53-201ENST00000291074 JADE3Q92613 823 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 PTERQ96BW5 349 aa20.13■□□□□ 0.81
VPS53-201ENST00000291074 CORO1CQ9ULV4 474 aaPredicted RBP20.13■□□□□ 0.81
VPS53-201ENST00000291074 GJB5O95377 273 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 RGRP47804 291 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 RPS24P62847 133 aaKnown RBP20.12■□□□□ 0.81
VPS53-201ENST00000291074 ACAP2Q15057 778 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 PPP1R3AQ16821 1122 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 CAPRIN2Q6IMN6 1127 aaKnown RBP20.12■□□□□ 0.81
VPS53-201ENST00000291074 GK5Q6ZS86 529 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 RYBPQ8N488 228 aaPredicted RBP20.12■□□□□ 0.81
VPS53-201ENST00000291074 SNX31Q8N9S9 440 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 FEM1CQ96JP0 617 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 SMIM14Q96QK8 99 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 NPAS2Q99743 824 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 LRFN2Q9ULH4 789 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 ZFP37Q9Y6Q3 630 aaPredicted RBP20.12■□□□□ 0.81
VPS53-201ENST00000291074 TRPC5OSA6NMA1 111 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 ARVCFO00192 962 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 MT-CO1P00395 513 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 RBP1P09455 135 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 ISCA2Q86U28 154 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 SPDL1Q96EA4 605 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 SPON2Q9BUD6 331 aa20.12■□□□□ 0.81
VPS53-201ENST00000291074 H3BNX3 289 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms