RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 DCTN4Q9UJW0 460 aa16.57■□□□□ 0.24
USP4-201ENST00000265560 RFTN1Q14699 578 aaPredicted RBP16.56■□□□□ 0.24
USP4-201ENST00000265560 GEN1Q17RS7 908 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 GLIPR1L2Q4G1C9 344 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 FAM78AQ5JUQ0 283 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 RNF187Q5TA31 235 aaPredicted RBP16.56■□□□□ 0.24
USP4-201ENST00000265560 KIAA0930Q6ICG6 404 aaPredicted RBP16.56■□□□□ 0.24
USP4-201ENST00000265560 SRLQ86TD4 932 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 FGF13Q92913 245 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 FAM95CA0A1B0GW59 222 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 SRCP12931 536 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 ARSAP15289 507 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 CRHR1P34998 444 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 CCNFP41002 786 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 TAS2R39P59534 338 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 CHI3L2Q15782 390 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 SFTPA1Q8IWL2 248 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 CIPCQ9C0C6 399 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 ZDHHC7Q9NXF8 308 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 MARCOQ9UEW3 520 aaPredicted RBP16.56■□□□□ 0.24
USP4-201ENST00000265560 CNTFP26441 200 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 INO80DQ53TQ3 878 aaPredicted RBP16.56■□□□□ 0.24
USP4-201ENST00000265560 Q6ZVU0 165 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 OTOAQ7RTW8 1153 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 C12orf40Q86WS4 652 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 GRIN3AQ8TCU5 1115 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 KCTD4Q8WVF5 259 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 C20orf27Q9GZN8 174 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 RHOJQ9H4E5 214 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 MSRAQ9UJ68 235 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 GGA2Q9UJY4 613 aa16.56■□□□□ 0.24
USP4-201ENST00000265560 SNX3O60493 162 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 DHRS4L1P0CG22 281 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 KITP10721 976 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 HOXA9P31269 272 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 SLC18A1P54219 525 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 DUSP6Q16828 381 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 TIFABQ6ZNK6 161 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 PIGWQ7Z7B1 504 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 NUDCD3Q8IVD9 361 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 EID2BQ96D98 161 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 SGF29Q96ES7 293 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 MCMBPQ9BTE3 642 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 NPHS2Q9NP85 383 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.55■□□□□ 0.24
USP4-201ENST00000265560 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.55■□□□□ 0.24
USP4-201ENST00000265560 GLP2RO95838 553 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 SPRED3Q2MJR0 410 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 ZNF783Q6ZMS7 281 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 PIM3Q86V86 326 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 ZSWIM9Q86XI8 627 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 CILP2Q8IUL8 1156 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 NPAS3Q8IXF0 933 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 C2CD4AQ8NCU7 369 aaPredicted RBP16.55■□□□□ 0.24
USP4-201ENST00000265560 PTCD2Q8WV60 388 aaKnown RBP16.55■□□□□ 0.24
USP4-201ENST00000265560 ACDQ96AP0 544 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 CDKN2AIPNLQ96HQ2 116 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 OLFM1Q99784 485 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 DUS2Q9NX74 493 aaKnown RBP16.55■□□□□ 0.24
USP4-201ENST00000265560 FKBPLQ9UIM3 349 aa16.55■□□□□ 0.24
USP4-201ENST00000265560 EPOP01588 193 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 PABPC1P11940 636 aaKnown RBP16.54■□□□□ 0.24
USP4-201ENST00000265560 SERPINB8P50452 374 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 NAB1Q13506 487 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 LYSMD3Q7Z3D4 306 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 CHST14Q8NCH0 376 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 RETREG1Q9H6L5 497 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 ZDHHC6Q9H6R6 413 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 POLR3BQ9NW08 1133 aaPredicted RBP16.54■□□□□ 0.24
USP4-201ENST00000265560 DOCK8Q8NF50 2099 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 TK2O00142 265 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 ZNF197O14709 1029 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 TIMM44O43615 452 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 LYPLA1O75608 230 aaPredicted RBP16.54■□□□□ 0.24
USP4-201ENST00000265560 GSRP00390 522 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 FASTKD1Q53R41 847 aaKnown RBP16.54■□□□□ 0.24
USP4-201ENST00000265560 MPP7Q5T2T1 576 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 CCDC197Q8NCU1 140 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 GPR22Q99680 433 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 OMDQ99983 421 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 MRM3Q9HC36 420 aaKnown RBP16.54■□□□□ 0.24
USP4-201ENST00000265560 COL6A3P12111 3177 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 UBA6A0AVT1 1052 aaPredicted RBP16.54■□□□□ 0.24
USP4-201ENST00000265560 CD3EAPO15446 510 aaKnown RBP16.54■□□□□ 0.24
USP4-201ENST00000265560 SLC35E2BP0CK96 405 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 CD151P48509 253 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 BST1Q10588 318 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 DHCR24Q15392 516 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 DPY19L3Q6ZPD9 716 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 SPATA21Q7Z572 469 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 ADIPOR2Q86V24 386 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 C10orf107Q8IVU9 208 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 LMLNQ96KR4 655 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 ABCG8Q9H221 673 aa16.54■□□□□ 0.24
USP4-201ENST00000265560 DDX6P26196 483 aaKnown RBP eCLIP16.53■□□□□ 0.24
USP4-201ENST00000265560 SLC6A11P48066 632 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 BCL2L1Q07817 233 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 PIANPQ8IYJ0 282 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 RMDN2Q96LZ7 410 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 ADGRE3Q9BY15 652 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms