RNA–Protein interactions for RNA: ENST00000638114.1

CACNA1A-259, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 3

Gene CACNA1A, Length 517 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-259ENST00000638114 KCTD6Q8NC69 237 aa16.88■□□□□ 0.29
CACNA1A-259ENST00000638114 ECHDC3Q96DC8 303 aa16.88■□□□□ 0.29
CACNA1A-259ENST00000638114 CCDC42Q96M95 316 aa16.88■□□□□ 0.29
CACNA1A-259ENST00000638114 NHEJ1Q9H9Q4 299 aaPredicted RBP16.88■□□□□ 0.29
CACNA1A-259ENST00000638114 SPTLC3Q9NUV7 552 aa16.88■□□□□ 0.29
CACNA1A-259ENST00000638114 LCMT1Q9UIC8 334 aa16.88■□□□□ 0.29
CACNA1A-259ENST00000638114 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 MFSD11O43934 449 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 LZTS3O60299 673 aaPredicted RBP16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 KRT7P08729 469 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 CDK4P11802 303 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 JUNDP17535 347 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 IL4RP24394 825 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 ARSEP51690 589 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 CLDN6P56747 220 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 TAS2R40P59535 323 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 YPEL5P62699 121 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 POLR2LP62875 67 aaKnown RBP16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 EIF2B5Q13144 721 aaKnown RBP16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 MESDQ14696 234 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 LRRC14Q15048 493 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 ZFYVE27Q5T4F4 411 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 ZNF548Q8NEK5 533 aaPredicted RBP16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 FAM71BQ8TC56 605 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 NSMCE3Q96MG7 304 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 SCUBE2Q9NQ36 999 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 NLGN3Q9NZ94 848 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 KLF15Q9UIH9 416 aa16.87■□□□□ 0.29
CACNA1A-259ENST00000638114 TRAFD1O14545 582 aaPredicted RBP16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 TOR1BO14657 336 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 SCAMP1O15126 338 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 NEBLO76041 1014 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 GIMD1P0DJR0 217 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 MAN1A1P33908 653 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 MMP13P45452 471 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 MAXP61244 160 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 ILKQ13418 452 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 PDK2Q15119 407 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 WSCD2Q2TBF2 565 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 MARC1Q5VT66 337 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 NCBP2-AS2Q69YL0 99 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 TMPRSS12Q86WS5 348 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 CNGA4Q8IV77 575 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 MAP7D3Q8IWC1 876 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 PGBD5Q8N414 524 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 PCDH19Q8TAB3 1148 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 LMX1AQ8TE12 382 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 PDCD6IPQ8WUM4 868 aaKnown RBP16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 NUDCD1Q96RS6 583 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 MGME1Q9BQP7 344 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 ZNF670Q9BS34 389 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 PCDHGC4Q9Y5F7 938 aa16.86■□□□□ 0.29
CACNA1A-259ENST00000638114 AKR1B15C9JRZ8 316 aaPredicted RBP16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 K7ESM1 405 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 AQP9O43315 295 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 SOCS5O75159 536 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 MAP3K6O95382 1288 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 PCCBP05166 539 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 ELFN1P0C7U0 828 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 JUPP14923 745 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 CR2P20023 1033 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 ACP1P24666 158 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 HNF1BP35680 557 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 RALGDSQ12967 914 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 PAFAH1B3Q15102 231 aaKnown RBP16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 ANKRD20A8PQ5CZ79 823 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 MACC1Q6ZN28 852 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 LRRC49Q8IUZ0 686 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 PHACTR4Q8IZ21 702 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 RBFAQ8N0V3 343 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 SLC35G2Q8TBE7 412 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 BTN2A2Q8WVV5 523 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 DUSP23Q9BVJ7 150 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 TRIM5Q9C035 493 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 CCDC86Q9H6F5 360 aaKnown RBP16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 NOD2Q9HC29 1040 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 NT5MQ9NPB1 228 aa16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 APOBEC3BQ9UH17 382 aaKnown RBP16.85■□□□□ 0.29
CACNA1A-259ENST00000638114 CFAP69A5D8W1 941 aa16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 A8MX80 341 aa16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 CPP00450 1065 aa16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 GARSP41250 739 aaKnown RBP16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 GALNT2Q10471 571 aa16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 TBX2Q13207 712 aaPredicted RBP16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 AGERQ15109 404 aa16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 FAXCQ5TGI0 409 aa16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 HES3Q5TGS1 186 aa16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 LIPIQ6XZB0 460 aa16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 DPPA4Q7L190 304 aa16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 RHOT2Q8IXI1 618 aa16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 APOLD1Q96LR9 279 aa16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 SLC13A1Q9BZW2 595 aa16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 TCEAL2Q9H3H9 227 aaPredicted RBP16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 SPASTQ9UBP0 616 aa16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 CSNK1G3Q9Y6M4 447 aa16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 KNTC1P50748 2209 aa16.84■□□□□ 0.29
CACNA1A-259ENST00000638114 WDFY3Q8IZQ1 3526 aa16.83■□□□□ 0.29
CACNA1A-259ENST00000638114 A0A1W2PQ67 120 aa16.83■□□□□ 0.28
CACNA1A-259ENST00000638114 TRABD2BA6NFA1 517 aa16.83■□□□□ 0.28
CACNA1A-259ENST00000638114 SRRM3A6NNA2 597 aaPredicted RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms