RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 PRORSD1PA6NEY8 169 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 SOCS2O14508 198 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 PSMD3O43242 534 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 GAS2O43903 313 aaKnown RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 KATNA1O75449 491 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 TOMM70O94826 608 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 SEC24AO95486 1093 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 AP2A1O95782 977 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 LTA4HP09960 611 aaKnown RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 PIRTP0C851 137 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 ARSAP15289 507 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 ARF4P18085 180 aaPredicted RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 LBPP18428 481 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 MATKP42679 507 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 BCAP31P51572 246 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 ARPP19P56211 112 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 RELAQ04206 551 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 CXCL9Q07325 125 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 PCID2Q5JVF3 399 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 SLC22A9Q8IVM8 553 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 PPP1R14BQ96C90 147 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 CENPNQ96H22 339 aaPredicted RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 TBL1YQ9BQ87 522 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 REXO4Q9GZR2 422 aaKnown RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 GBA2Q9HCG7 927 aaPredicted RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 CACNA2D2Q9NY47 1150 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 RIMS3Q9UJD0 308 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 TLL2Q9Y6L7 1015 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 PLA2G6O60733 806 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 NDUFS3O75489 264 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 RSL1D1O76021 490 aaKnown RBP11.09□□□□□ -0.63
CLN3-244ENST00000636147 EDN1P05305 212 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 ZNF286BP0CG31 522 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 CHRM3P20309 590 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 NDUFV1P49821 464 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 TAF6P49848 677 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 GEMP55040 296 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 POU4F1Q01851 419 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 DNASE1L3Q13609 305 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 CYP2A13Q16696 494 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 ATG14Q6ZNE5 492 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 ARHGAP36Q6ZRI8 547 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 TAS2R42Q7RTR8 314 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 P3H2Q8IVL5 708 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 RDH11Q8TC12 318 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 NCSTNQ92542 709 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 MINDY3Q9H8M7 445 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 SMOXQ9NWM0 555 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 SCHIP1Q9P0W5 487 aaPredicted RBP11.09□□□□□ -0.63
CLN3-244ENST00000636147 PLOD2O00469 737 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 ASNA1O43681 348 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 IPO13O94829 963 aaKnown RBP11.09□□□□□ -0.63
CLN3-244ENST00000636147 ZNF682O95780 498 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 HSMCR30P0CW71 290 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 CYP4B1P13584 511 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 NOS2P35228 1153 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 RXRGP48443 463 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 MAXP61244 160 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 TSTA3Q13630 321 aaPredicted RBP11.09□□□□□ -0.63
CLN3-244ENST00000636147 GRM2Q14416 872 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 RAB39AQ14964 217 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 NR6A1Q15406 480 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 TGFBIQ15582 683 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 ILDR2Q71H61 639 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 FAM83AQ86UY5 434 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 ZDHHC17Q8IUH5 632 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 EFHBQ8N7U6 833 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.09□□□□□ -0.63
CLN3-244ENST00000636147 DACT3Q96B18 629 aaPredicted RBP11.09□□□□□ -0.63
CLN3-244ENST00000636147 MAGED4Q96JG8 741 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 RIBC2Q9H4K1 309 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 RERGLQ9H628 205 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 GIMAP4Q9NUV9 329 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 EXD2Q9NVH0 621 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 MKS1Q9NXB0 559 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 HACL1Q9UJ83 578 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 TRHDEQ9UKU6 1024 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 WDR37Q9Y2I8 494 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 CITO14578 2027 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 TAF4O00268 1085 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 AHSGP02765 367 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 PTPN3P26045 913 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 CDH5P33151 784 aaPredicted RBP11.09□□□□□ -0.63
CLN3-244ENST00000636147 CXCR3P49682 368 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 DMC1Q14565 340 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 DPYSL2Q16555 572 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 GPR158Q5T848 1215 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 TMEM53Q6P2H8 277 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 LRRC8DQ7L1W4 858 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 PAGE2Q7Z2X7 111 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 MILR1Q7Z6M3 343 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 ANKRD13AQ8IZ07 590 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 OSMRQ99650 979 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 GOLGA2P5Q9HBQ8 144 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 GIN1Q9NXP7 522 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 GMPR2Q9P2T1 348 aaKnown RBP11.09□□□□□ -0.63
CLN3-244ENST00000636147 AFF4Q9UHB7 1163 aaKnown RBP11.09□□□□□ -0.63
CLN3-244ENST00000636147 COL4A1P02462 1669 aa11.09□□□□□ -0.63
CLN3-244ENST00000636147 DOCK2Q92608 1830 aa11.08□□□□□ -0.63
CLN3-244ENST00000636147 SMCHD1A6NHR9 2005 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms