RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ZNF10P21506 573 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-208ENST00000625916 DVL1P1P54792 670 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-208ENST00000625916 PITX1P78337 314 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-208ENST00000625916 PPIGQ13427 754 aaKnown RBP eCLIP2.88□□□□□ -1.95
SCN1A-208ENST00000625916 RUNX2Q13950 521 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 ZNF876PQ49A33 203 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 FBXO43Q4G163 708 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 SH2D4BQ5SQS7 431 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 SULT6B1Q6IMI4 303 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 PGBD2Q6P3X8 592 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 GJB7Q6PEY0 223 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 KRBA2Q6ZNG9 492 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 ODF3L1Q8IXM7 274 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 SLC24A4Q8NFF2 622 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 CADM4Q8NFZ8 388 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 BBS10Q8TAM1 723 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 HSPH1Q92598 858 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 GOLGA1Q92805 767 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 ALG14Q96F25 216 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 ZNF583Q96ND8 569 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 CTDSP1Q9GZU7 261 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 HDAC6Q9UBN7 1215 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 E7EVH7 732 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 H0Y3Z8 333 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 SYT5O00445 386 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 PLRG1O43660 514 aaKnown RBP2.87□□□□□ -1.95
SCN1A-208ENST00000625916 DHX16O60231 1041 aaKnown RBP2.87□□□□□ -1.95
SCN1A-208ENST00000625916 MTA2O94776 668 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 NDUFB4O95168 129 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 WEE2P0C1S8 567 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 CD53P19397 219 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 HNRNPH1P31943 449 aaKnown RBP2.87□□□□□ -1.95
SCN1A-208ENST00000625916 PICALMQ13492 652 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 EFNB3Q15768 340 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 PPP6R3Q5H9R7 873 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-208ENST00000625916 IL31Q6EBC2 164 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 LYG1Q8N1E2 194 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 SRBD1Q8N5C6 995 aaKnown RBP2.87□□□□□ -1.95
SCN1A-208ENST00000625916 ATG16L2Q8NAA4 619 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 ADAD2Q8NCV1 583 aaKnown RBP2.87□□□□□ -1.95
SCN1A-208ENST00000625916 GDPD5Q8WTR4 605 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 TMEM170AQ8WVE7 144 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 ERGIC1Q969X5 290 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 LGALS12Q96DT0 336 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 CDCA5Q96FF9 252 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 KXD1Q9BQD3 176 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 PYGO2Q9BRQ0 406 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 DCTN5Q9BTE1 182 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 CSTL1Q9H114 145 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 KLHL1Q9NR64 748 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 FAM118AQ9NWS6 357 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 RALYQ9UKM9 306 aaKnown RBP2.87□□□□□ -1.95
SCN1A-208ENST00000625916 KCNK7Q9Y2U2 307 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 PCDHGB5Q9Y5G0 923 aa2.87□□□□□ -1.95
SCN1A-208ENST00000625916 HMX3A6NHT5 357 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 EBAG9O00559 213 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 TUBBP07437 444 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 HLA-DOBP13765 273 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 TNNT1P13805 278 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 SRD5A1P18405 259 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 AZU1P20160 251 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 GPTP24298 496 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 SERPINF1P36955 418 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 TMPOP42166 694 aaKnown RBP2.86□□□□□ -1.95
SCN1A-208ENST00000625916 TUBB4BP68371 445 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 NEDD9Q14511 834 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 HLTFQ14527 1009 aaKnown RBP eCLIP2.86□□□□□ -1.95
SCN1A-208ENST00000625916 KRT72Q14CN4 511 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 SOWAHAQ2M3V2 549 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 ESCO2Q56NI9 601 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 ZC2HC1BQ5TFG8 222 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 ARHGAP17Q68EM7 881 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 LIN54Q6MZP7 749 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 IL20RBQ6UXL0 311 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 CEACAM20Q6UY09 585 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP2.86□□□□□ -1.95
SCN1A-208ENST00000625916 ANKRD13AQ8IZ07 590 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 PARP16Q8N5Y8 322 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 MAPK1IP1LQ8NDC0 245 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 OR10V1Q8NGI7 309 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 KTI12Q96EK9 354 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-208ENST00000625916 ZNF599Q96NL3 588 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 TAF1DQ9H5J8 278 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-208ENST00000625916 TTC12Q9H892 705 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-208ENST00000625916 PLEKHA5Q9HAU0 1116 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 TLR8Q9NR97 1041 aaKnown RBP2.86□□□□□ -1.95
SCN1A-208ENST00000625916 C1RLQ9NZP8 487 aa2.86□□□□□ -1.95
SCN1A-208ENST00000625916 FAF1Q9UNN5 650 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-208ENST00000625916 ZNF8P17098 575 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-208ENST00000625916 GNL1P36915 607 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-208ENST00000625916 NEK3P51956 506 aa2.85□□□□□ -1.95
SCN1A-208ENST00000625916 SMAD1Q15797 465 aaKnown RBP2.85□□□□□ -1.95
SCN1A-208ENST00000625916 KCNT1Q5JUK3 1230 aa2.85□□□□□ -1.95
SCN1A-208ENST00000625916 ZNF484Q5JVG2 852 aa2.85□□□□□ -1.95
SCN1A-208ENST00000625916 PDSS1Q5T2R2 415 aa2.85□□□□□ -1.95
SCN1A-208ENST00000625916 LCTLQ6UWM7 567 aa2.85□□□□□ -1.95
SCN1A-208ENST00000625916 B3GNT6Q6ZMB0 384 aa2.85□□□□□ -1.95
SCN1A-208ENST00000625916 KCTD8Q6ZWB6 473 aa2.85□□□□□ -1.95
SCN1A-208ENST00000625916 STXBP4Q6ZWJ1 553 aa2.85□□□□□ -1.95
SCN1A-208ENST00000625916 SH2D6Q7Z4S9 175 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms