RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 A8MV72 311 aaPredicted RBP7.96□□□□□ -1.13
VPS11-209ENST00000622309 SCO1O75880 301 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 PRKD3O94806 890 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 NPPAP01160 153 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 YES1P07947 543 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 MMP10P09238 476 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 PSMA3P25788 255 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 FMO4P31512 558 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 DPP6P42658 865 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 DEFA1P59665 94 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 DEFA3P59666 94 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 GALNT3Q14435 633 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 ZNF181Q2M3W8 571 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 N4BP2L1Q5TBK1 243 aaPredicted RBP7.96□□□□□ -1.13
VPS11-209ENST00000622309 LIN9Q5TKA1 542 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 KRT39Q6A163 491 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 IL31Q6EBC2 164 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 GTF2IRD2BQ6EKJ0 949 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 LRRC8EQ6NSJ5 796 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 GTF2IRD2Q86UP8 949 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 FAM71AQ8IYT1 594 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 MYCT1Q8N699 235 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 FAM71DQ8N9W8 422 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 SHCBP1Q8NEM2 672 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 HAS1Q92839 578 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 SNAPC3Q92966 411 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 CEP170P1Q96L14 293 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 KCTD14Q9BQ13 255 aaPredicted RBP7.96□□□□□ -1.13
VPS11-209ENST00000622309 MCMBPQ9BTE3 642 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 C1QTNF7Q9BXJ2 289 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 LRRC40Q9H9A6 602 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 RNF19AQ9NV58 838 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 DOCK2Q92608 1830 aa7.96□□□□□ -1.13
VPS11-209ENST00000622309 UBR3Q6ZT12 1888 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 COL5A3P25940 1745 aaPredicted RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 ARAP2Q8WZ64 1704 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 TCRBV7S3A2A0A539 114 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 HEATR9A2RTY3 570 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 TYW5A2RUC4 315 aaKnown RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 C9IYK1 514 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 TMEM63AO94886 807 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 TOP3BO95985 862 aaKnown RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 KRT7P08729 469 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 SPNP16150 400 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 UQCRC1P31930 480 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 MTHFRP42898 656 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 GCLMP48507 274 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 PSME3P61289 254 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 C1QBPQ07021 282 aaKnown RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 COG2Q14746 738 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 PON2Q15165 354 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 MFSD14BQ5SR56 506 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 INTS11Q5TA45 600 aaKnown RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 EPGNQ6UW88 154 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 MFSD7Q6UXD7 560 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 PCDH20Q8N6Y1 951 aaKnown RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 CCDC185Q8N715 623 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 PIK3C3Q8NEB9 887 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 TTLQ8NG68 377 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 RHOXF1Q8NHV9 184 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 CHAC2Q8WUX2 184 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 KCTD4Q8WVF5 259 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 GTF2H4Q92759 462 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 NKD2Q969F2 451 aaPredicted RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 TOP1MTQ969P6 601 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 COA7Q96BR5 231 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 NPAS2Q99743 824 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 TTPALQ9BTX7 342 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 MIR1-1HGQ9H1L0 117 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 TBC1D22BQ9NU19 505 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 MRPL39Q9NYK5 338 aaKnown RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 IL37Q9NZH6 218 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 NPAP1Q9NZP6 1156 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 PCDH10Q9P2E7 1040 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 SLCO3A1Q9UIG8 710 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 LAMP5Q9UJQ1 280 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 RNF112Q9ULX5 631 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 H0Y858 1186 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 TPST1O60507 370 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 MED24O75448 989 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 EGFRP00533 1210 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 RPL22P35268 128 aaKnown RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 NPTX2P47972 431 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 ETV1P50549 477 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 BLVRAP53004 296 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 LSM3P62310 102 aaKnown RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 SLC10A2Q12908 348 aaPredicted RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 DOK7Q18PE1 504 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 ATP13A4Q4VNC1 1196 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 C2CD6Q53TS8 623 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 BRMS1LQ5PSV4 323 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 TBCELQ5QJ74 424 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 SHEQ5VZ18 495 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 TATDN1Q6P1N9 297 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 STXBP4Q6ZWJ1 553 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 ERMP1Q7Z2K6 904 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 CDH24Q86UP0 819 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 CLEC10AQ8IUN9 316 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 SLC9A9Q8IVB4 645 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 C10orf107Q8IVU9 208 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms