RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CD6P30203 668 aa19.84■□□□□ 0.77
UPF3A-211ENST00000618700 ACSL1P33121 698 aa19.84■□□□□ 0.77
UPF3A-211ENST00000618700 CDK18Q07002 472 aa19.84■□□□□ 0.77
UPF3A-211ENST00000618700 CCDC15Q0P6D6 951 aa19.84■□□□□ 0.77
UPF3A-211ENST00000618700 SEMA5AQ13591 1074 aa19.84■□□□□ 0.77
UPF3A-211ENST00000618700 PCSK7Q16549 785 aa19.84■□□□□ 0.77
UPF3A-211ENST00000618700 FAXCQ5TGI0 409 aa19.84■□□□□ 0.77
UPF3A-211ENST00000618700 FAM124AQ86V42 546 aa19.84■□□□□ 0.77
UPF3A-211ENST00000618700 FAM160A2Q8N612 972 aaPredicted RBP19.84■□□□□ 0.77
UPF3A-211ENST00000618700 FRMD1Q8N878 549 aa19.84■□□□□ 0.77
UPF3A-211ENST00000618700 TOE1Q96GM8 510 aaKnown RBP19.84■□□□□ 0.77
UPF3A-211ENST00000618700 MCCC1Q96RQ3 725 aaPredicted RBP19.84■□□□□ 0.77
UPF3A-211ENST00000618700 BTBD1Q9H0C5 482 aa19.84■□□□□ 0.77
UPF3A-211ENST00000618700 KDM4CQ9H3R0 1056 aa19.84■□□□□ 0.77
UPF3A-211ENST00000618700 ETNK1Q9HBU6 452 aa19.84■□□□□ 0.77
UPF3A-211ENST00000618700 MBD1Q9UIS9 605 aaPredicted RBP19.84■□□□□ 0.77
UPF3A-211ENST00000618700 FADS3Q9Y5Q0 445 aa19.84■□□□□ 0.77
UPF3A-211ENST00000618700 NUMA1Q14980 2115 aa19.84■□□□□ 0.77
UPF3A-211ENST00000618700 LILRB5O75023 590 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 EPOP01588 193 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 ADRA1AP35348 466 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 PTPN5P54829 565 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 POLR2LP62875 67 aaKnown RBP19.83■□□□□ 0.77
UPF3A-211ENST00000618700 DR1Q01658 176 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 PTK6Q13882 451 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 DHX34Q14147 1143 aaKnown RBP19.83■□□□□ 0.77
UPF3A-211ENST00000618700 TRIP13Q15645 432 aaPredicted RBP19.83■□□□□ 0.77
UPF3A-211ENST00000618700 LRRC73Q5JTD7 316 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 TAB3Q8N5C8 712 aaPredicted RBP19.83■□□□□ 0.77
UPF3A-211ENST00000618700 LPCAT1Q8NF37 534 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 IPMKQ8NFU5 416 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 GAB3Q8WWW8 586 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 MARVELD3Q96A59 401 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 KRT12Q99456 494 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 PREBQ9HCU5 417 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 PCDH12Q9NPG4 1184 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 RAB6BQ9NRW1 208 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 PHTF1Q9UMS5 762 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 INVSQ9Y283 1065 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 ITM2BQ9Y287 266 aa19.83■□□□□ 0.77
UPF3A-211ENST00000618700 FANCMQ8IYD8 2048 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 GOLGA6CA6NDK9 693 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 GOLGA6BA6NDN3 693 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 RPP40O75818 363 aaKnown RBP19.82■□□□□ 0.76
UPF3A-211ENST00000618700 AP2A1O95782 977 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 NDST3O95803 873 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 PRKCGP05129 697 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 ATXN1LP0C7T5 689 aaKnown RBP19.82■□□□□ 0.76
UPF3A-211ENST00000618700 GOLGA6DP0CG33 693 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 BCKDHBP21953 392 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 CNR2P34972 360 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 MMP12P39900 470 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 GRIA4P48058 902 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 QPCTQ16769 361 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 SYDE1Q6ZW31 735 aaPredicted RBP19.82■□□□□ 0.76
UPF3A-211ENST00000618700 TTC7BQ86TV6 843 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 JAMLQ86YT9 394 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 OR14C36Q8NHC7 312 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 IFT43Q96FT9 208 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 ADGRE3Q9BY15 652 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 L2HGDHQ9H9P8 463 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 GOLGA6AQ9NYA3 693 aa19.82■□□□□ 0.76
UPF3A-211ENST00000618700 A0A0J9YYE9 177 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 CAPN8A6NHC0 703 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 ERI2A8K979 691 aaKnown RBP19.81■□□□□ 0.76
UPF3A-211ENST00000618700 HRO43593 1189 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 SEMA4FO95754 770 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 TRBC1P01850 177 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 XPAP23025 273 aaPredicted RBP19.81■□□□□ 0.76
UPF3A-211ENST00000618700 PLA2G5P39877 138 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 VPS41P49754 854 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 ELP6Q0PNE2 266 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 GPS1Q13098 491 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 SRSF5Q13243 272 aaKnown RBP19.81■□□□□ 0.76
UPF3A-211ENST00000618700 GALNT3Q14435 633 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 PPP1R7Q15435 360 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 RANBP10Q6VN20 620 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 SLC36A4Q6YBV0 504 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 USP45Q70EL2 814 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 DPPA4Q7L190 304 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 KDELC2Q7Z4H8 507 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 PAF1Q8N7H5 531 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 OR2T34Q8NGX1 318 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 SCRN2Q96FV2 425 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 LYSMD1Q96S90 227 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 FICDQ9BVA6 458 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 FSD1LQ9BXM9 530 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 LRRC40Q9H9A6 602 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 EIF2B3Q9NR50 452 aaKnown RBP19.81■□□□□ 0.76
UPF3A-211ENST00000618700 GGT7Q9UJ14 662 aa19.81■□□□□ 0.76
UPF3A-211ENST00000618700 LRRC72A6NJI9 287 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 ANKRD66B4E2M5 251 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 H0Y858 1186 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 TTI1O43156 1089 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 PSMD3O43242 534 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 SUN1O94901 812 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 HOXB1P14653 301 aaPredicted RBP19.8■□□□□ 0.76
UPF3A-211ENST00000618700 ITIH2P19823 946 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 HLA-DPA1P20036 260 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 MAGEA6P43360 314 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms