RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TRAF2Q12933 501 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 IHHQ14623 411 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 PPP2R5EQ16537 467 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 SPOCD1Q6ZMY3 1216 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 DAAM2Q86T65 1068 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 TP53I13Q8NBR0 393 aaPredicted RBP16.25■□□□□ 0.19
TRIM28-213ENST00000598355 EXD1Q8NHP7 514 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 RNF25Q96BH1 459 aaPredicted RBP16.25■□□□□ 0.19
TRIM28-213ENST00000598355 IFT43Q96FT9 208 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 KLHDC7BQ96G42 594 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 POLR1EQ9GZS1 481 aaKnown RBP16.25■□□□□ 0.19
TRIM28-213ENST00000598355 SLC32A1Q9H598 525 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 NT5MQ9NPB1 228 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 SCUBE2Q9NQ36 999 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 PPIL1Q9Y3C6 166 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 PTPRBP23467 1997 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 SCN8AQ9UQD0 1980 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 TTC24A2A3L6 582 aaPredicted RBP16.24■□□□□ 0.19
TRIM28-213ENST00000598355 GRID2IPA4D2P6 1211 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 KCNK3O14649 394 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 MMP20O60882 483 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 TM7SF2O76062 418 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 HLA-DQB2P05538 268 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 C6P13671 934 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 CTNNA2P26232 953 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 PMLP29590 882 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 CLDN2P57739 230 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 TFDP3Q5H9I0 405 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 CFAP58Q5T655 872 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 N4BP2L1Q5TBK1 243 aaPredicted RBP16.24■□□□□ 0.19
TRIM28-213ENST00000598355 ERAP2Q6P179 960 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 DPPA4Q7L190 304 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 CCDC13Q8IYE1 715 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 ARRDC2Q8TBH0 407 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.24■□□□□ 0.19
TRIM28-213ENST00000598355 CXorf40AQ8TE69 158 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 SAP25Q8TEE9 199 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 ZNF830Q96NB3 372 aaPredicted RBP16.24■□□□□ 0.19
TRIM28-213ENST00000598355 CAMK1GQ96NX5 476 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 MCCC1Q96RQ3 725 aaPredicted RBP16.24■□□□□ 0.19
TRIM28-213ENST00000598355 LGMNQ99538 433 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 PCDHGC4Q9Y5F7 938 aa16.24■□□□□ 0.19
TRIM28-213ENST00000598355 A0A0U1RQJ8 604 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 GOLGA6L6A8MZA4 724 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 ZRANB2O95218 330 aaKnown RBP eCLIP16.23■□□□□ 0.19
TRIM28-213ENST00000598355 PGLSO95336 258 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 GM2AP17900 193 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 TGM2P21980 687 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 XPAP23025 273 aaPredicted RBP16.23■□□□□ 0.19
TRIM28-213ENST00000598355 CES1P23141 567 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 PTPN7P35236 360 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 GRK6P43250 576 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 RABIFP47224 123 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 NR2C2P49116 596 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 ARRB1P49407 418 aaPredicted RBP16.23■□□□□ 0.19
TRIM28-213ENST00000598355 POLR2LP62875 67 aaKnown RBP16.23■□□□□ 0.19
TRIM28-213ENST00000598355 FAM193AP78312 1265 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 ADCY2Q08462 1091 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 ZBTB17Q13105 803 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 SGCGQ13326 291 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 TFDP2Q14188 446 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 PDK1Q15118 436 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 PRKD1Q15139 912 aaPredicted RBP16.23■□□□□ 0.19
TRIM28-213ENST00000598355 NPNTQ6UXI9 565 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 LIPIQ6XZB0 460 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 RFX6Q8HWS3 928 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 DCP2Q8IU60 420 aaKnown RBP16.23■□□□□ 0.19
TRIM28-213ENST00000598355 CNTD1Q8N815 330 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 RBM41Q96IZ5 413 aaKnown RBP16.23■□□□□ 0.19
TRIM28-213ENST00000598355 SEMA3CQ99985 751 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 DESI2Q9BSY9 194 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 WRAP53Q9BUR4 548 aaKnown RBP16.23■□□□□ 0.19
TRIM28-213ENST00000598355 C1QTNF7Q9BXJ2 289 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 BRD8Q9H0E9 1235 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 WASF3Q9UPY6 502 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 BTBD3Q9Y2F9 522 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 PCDHA3Q9Y5H8 950 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 HEY1Q9Y5J3 304 aa16.23■□□□□ 0.19
TRIM28-213ENST00000598355 SPTY2D1-AS1A0A0U1RR47 76 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 CCDC66A2RUB6 948 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 TOR1BO14657 336 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 FPGTO14772 594 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 PPP1R12AO14974 1030 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-213ENST00000598355 DKK1O94907 266 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 CPP00450 1065 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 PRKCGP05129 697 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 KRT10P13645 584 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 TNNT1P13805 278 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 PECAM1P16284 738 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-213ENST00000598355 LIG3P49916 1009 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 PEX5P50542 639 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 COPS2P61201 443 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 DSC2Q02487 901 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 SUZ12Q15022 739 aaKnown RBP16.22■□□□□ 0.19
TRIM28-213ENST00000598355 TPRG1LQ5T0D9 272 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 Q6ZSR6 202 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 BBS12Q6ZW61 710 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 PTAR1Q7Z6K3 402 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-213ENST00000598355 KIAA1328Q86T90 577 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 NT5DC3Q86UY8 548 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms