RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	CTSE	P14091	401 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	MMP12	P39900	470 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	PAPOLA	P51003	745 aa	Known RBP	10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	BLK	P51451	505 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	SUOX	P51687	545 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	AIF1	P55008	147 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	UCN	P55089	124 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	SPIDR	Q14159	915 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	NFATC4	Q14934	902 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	ELOC	Q15369	112 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	TAF1B	Q53T94	588 aa	Predicted RBP	10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	ACAD10	Q6JQN1	1059 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	ESRP1	Q6NXG1	681 aa	Known RBP	10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	ERAP2	Q6P179	960 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	IGF2-AS	Q6U949	168 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	B3GNT8	Q7Z7M8	397 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	FSTL5	Q8N475	847 aa	Predicted RBP	10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	ARL10	Q8N8L6	244 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	PLA2G15	Q8NCC3	412 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	TSEN2	Q8NCE0	465 aa	Known RBP	10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	LSM14A	Q8ND56	463 aa	Known RBP	10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	ANKRD20A12P	Q8NF67	263 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	PDXP	Q96GD0	296 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	PEBP4	Q96S96	227 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	APOO	Q9BUR5	198 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	DPH1	Q9BZG8	443 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	EDEM3	Q9BZQ6	932 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	TRIM7	Q9C029	511 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	SLC39A8	Q9C0K1	460 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	HSD3B7	Q9H2F3	369 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	DHX35	Q9H5Z1	703 aa	Known RBP	10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	ANO10	Q9NW15	660 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	KL	Q9UEF7	1012 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	GPR34	Q9UPC5	381 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	AP4E1	Q9UPM8	1137 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	ATP8A1	Q9Y2Q0	1164 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	PCDHGA8	Q9Y5G5	932 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	LRRK1	Q38SD2	2015 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	CCDC187	A0A096LP49	1063 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	CDRT15L2	A8MXV6	281 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	ERVH48-1	M5A8F1	160 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	EEF2K	O00418	725 aa	Known RBP	10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	NTN3	O00634	580 aa	Predicted RBP	10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	TOR1B	O14657	336 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	ALPI	P09923	528 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	ATP1A3	P13637	1013 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	PLA2G2A	P14555	144 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	FER	P16591	822 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	CDK11B	P21127	795 aa	Known RBP	10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	PSMA2	P25787	234 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	HTR1B	P28222	390 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	PEX5	P50542	639 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	NDST2	P52849	883 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	SRP54	P61011	504 aa	Known RBP	10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	CCL7	P80098	99 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	SKOR1	P84550	965 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	CFHR1	Q03591	330 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	RALGDS	Q12967	914 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	MAMLD1	Q13495	774 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	NCAPH	Q15003	741 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	STX1A	Q16623	288 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	BRAT1	Q6PJG6	821 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	SASS6	Q6UVJ0	657 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	ARHGAP36	Q6ZRI8	547 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	CLEC17A	Q6ZS10	378 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	IRF2BP2	Q7Z5L9	587 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	SRL	Q86TD4	932 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	SFTPA2	Q8IWL1	248 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	ARHGAP12	Q8IWW6	846 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	SDR16C5	Q8N3Y7	309 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	ARFGAP1	Q8N6T3	406 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	NPW	Q8N729	165 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	WDR36	Q8NI36	951 aa	Known RBP	10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	HCAR2	Q8TDS4	363 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	SCG3	Q8WXD2	468 aa	Known RBP	10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	OR1E3	Q8WZA6	343 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	GRAMD1A	Q96CP6	724 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	NSMCE3	Q96MG7	304 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	WDR92	Q96MX6	357 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	ZNF641	Q96N77	438 aa	Predicted RBP	10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	KCTD15	Q96SI1	283 aa	Predicted RBP	10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	SYT11	Q9BT88	431 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	SNRNP25	Q9BV90	132 aa	Known RBP	10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	FOXP3	Q9BZS1	431 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	PCSK1N	Q9UHG2	260 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	ZNF462	Q96JM2	2506 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	LRP4	O75096	1905 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	KIF26B	Q2KJY2	2108 aa		10.6	□□□□□ -0.71
LSM4-205	ENST00000597776	TMEM202	A6NGA9	273 aa		10.59	□□□□□ -0.71
LSM4-205	ENST00000597776	ARHGAP42	A6NI28	874 aa		10.59	□□□□□ -0.71
LSM4-205	ENST00000597776	LRRC10B	A6NIK2	292 aa		10.59	□□□□□ -0.71
LSM4-205	ENST00000597776	TMEM110-MUSTN1	A8MSY1	372 aa		10.59	□□□□□ -0.71
LSM4-205	ENST00000597776		A8MX80	341 aa		10.59	□□□□□ -0.71
LSM4-205	ENST00000597776		D6RAR5	112 aa		10.59	□□□□□ -0.71
LSM4-205	ENST00000597776	AGRP	O00253	132 aa		10.59	□□□□□ -0.71
LSM4-205	ENST00000597776	DFFA	O00273	331 aa		10.59	□□□□□ -0.71
LSM4-205	ENST00000597776	DAPK3	O43293	454 aa		10.59	□□□□□ -0.71
LSM4-205	ENST00000597776	PALM	O75781	387 aa		10.59	□□□□□ -0.71
LSM4-205	ENST00000597776	RECQL5	O94762	991 aa	Predicted RBP	10.59	□□□□□ -0.71
LSM4-205	ENST00000597776	RPLP0	P05388	317 aa	Known RBP	10.59	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms