RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 MIB2Q96AX9 1013 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 DHTKD1Q96HY7 919 aaPredicted RBP10.22□□□□□ -0.77
TRIM28-210ENST00000597618 TBCBQ99426 244 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 DDA1Q9BW61 102 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 DPEP2Q9H4A9 486 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 RDH14Q9HBH5 336 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 TMPRSS4Q9NRS4 437 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 IGSF5Q9NSI5 407 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 ZFC3H1O60293 1989 aaKnown RBP10.21□□□□□ -0.77
TRIM28-210ENST00000597618 SDK2Q58EX2 2172 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 ZSCAN5CA6NGD5 496 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-210ENST00000597618 BECN2A8MW95 431 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 CACNB4O00305 520 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-210ENST00000597618 GNA14O95837 355 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 IGSF6O95976 241 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 PCCBP05166 539 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 FGF3P11487 239 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-210ENST00000597618 TIMP2P16035 220 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 KELP23276 732 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 KRT9P35527 623 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 SCNN1AP37088 669 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 PPP1R2P41236 205 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 MAPKAPK2P49137 400 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 ARSDP51689 593 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 KIAA1024LP59773 190 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 B4GALNT1Q00973 533 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 KLRB1Q12918 225 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 TRA2AQ13595 282 aaKnown RBP eCLIP10.21□□□□□ -0.77
TRIM28-210ENST00000597618 AMZ1Q400G9 498 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 ZNF438Q7Z4V0 828 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 AGBL5Q8NDL9 886 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 RCBTB1Q8NDN9 531 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 OR56A4Q8NGH8 313 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 SPATA20Q8TB22 786 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 OR1E3Q8WZA6 343 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 SMARCE1Q969G3 411 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 SNX21Q969T3 373 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 PMEPA1Q969W9 287 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 KIAA1143Q96AT1 154 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-210ENST00000597618 SLC45A3Q96JT2 553 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 CCDC74BQ96LY2 380 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 ASPSCR1Q9BZE9 553 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 SCAND2PQ9GZW5 306 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-210ENST00000597618 MAGEH1Q9H213 219 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 RETREG1Q9H6L5 497 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 FGF22Q9HCT0 170 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 PLEKHB1Q9UF11 243 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-210ENST00000597618 COQ6Q9Y2Z9 468 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 MFHAS1Q9Y4C4 1052 aa10.21□□□□□ -0.77
TRIM28-210ENST00000597618 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.21□□□□□ -0.77
TRIM28-210ENST00000597618 ABCA12Q86UK0 2595 aa10.21□□□□□ -0.78
TRIM28-210ENST00000597618 IGHV5-10-1A0A0J9YXX1 117 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 BICDL2A1A5D9 508 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 RHPN2P1A8MT19 583 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 TNFRSF10CO14798 259 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 B4GAT1O43505 415 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 RAD1O60671 282 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 RAMP2O60895 175 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 TMCC1O94876 653 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 ITIH2P19823 946 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 CSTF2P33240 577 aaKnown RBP eCLIP10.2□□□□□ -0.78
TRIM28-210ENST00000597618 LRBAP50851 2863 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 MARSP56192 900 aaKnown RBP10.2□□□□□ -0.78
TRIM28-210ENST00000597618 OR1D5P58170 312 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 RAB15P59190 212 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 PTK2Q05397 1052 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 CDC20Q12834 499 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 SEPT6Q14141 434 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 NR1D2Q14995 579 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 AGERQ15109 404 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 ARHGAP44Q17R89 818 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 TSR1Q2NL82 804 aaKnown RBP10.2□□□□□ -0.78
TRIM28-210ENST00000597618 FAM102AQ5T9C2 384 aaPredicted RBP10.2□□□□□ -0.78
TRIM28-210ENST00000597618 KCTD16Q68DU8 428 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 SMYD5Q6GMV2 418 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 TTI2Q6NXR4 508 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 ERAP2Q6P179 960 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 FOXR2Q6PJQ5 311 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 NYAP1Q6ZVC0 841 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 FAM131BQ86XD5 332 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 SFTPA2Q8IWL1 248 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 HSCBQ8IWL3 235 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 HCAR2Q8TDS4 363 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 APOBEC4Q8WW27 367 aaKnown RBP10.2□□□□□ -0.78
TRIM28-210ENST00000597618 CASKIN2Q8WXE0 1202 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 ART4Q93070 314 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 HMCESQ96FZ2 354 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 ABHD17AQ96GS6 310 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 NUDT22Q9BRQ3 303 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 EFHD1Q9BUP0 239 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 TTYH3Q9C0H2 523 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 GPN2Q9H9Y4 310 aaPredicted RBP10.2□□□□□ -0.78
TRIM28-210ENST00000597618 B3GALT1Q9Y5Z6 326 aa10.2□□□□□ -0.78
TRIM28-210ENST00000597618 LRP4O75096 1905 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 TMEM202A6NGA9 273 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 PRR19A6NJB7 356 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 NKX2-8O15522 239 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 MTSS1O43312 755 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 AGFG2O95081 481 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 PRKAR1AP10644 381 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms