RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 LRRK1Q38SD2 2015 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 FLNBO75369 2602 aaKnown RBP11.17□□□□□ -0.62
LIG1-211ENST00000596457 C4orf47A7E2U8 309 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 UPK3BL1B0FP48 263 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 UPK3BL2E5RIL1 263 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 F5H423 210 aaPredicted RBP11.17□□□□□ -0.62
LIG1-211ENST00000596457 ARHGAP33O14559 1287 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 TSPAN6O43657 245 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 AP1G1O43747 822 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 CPP00450 1065 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 CTPS1P17812 591 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 CR2P20023 1033 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 KCNA4P22459 653 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 CD38P28907 300 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 AFF3P51826 1226 aaKnown RBP11.17□□□□□ -0.62
LIG1-211ENST00000596457 CLDN2P57739 230 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 POLR2LP62875 67 aaKnown RBP11.17□□□□□ -0.62
LIG1-211ENST00000596457 RPS21P63220 83 aaKnown RBP11.17□□□□□ -0.62
LIG1-211ENST00000596457 RACK1P63244 317 aaKnown RBP11.17□□□□□ -0.62
LIG1-211ENST00000596457 OTUD4Q01804 1114 aaKnown RBP11.17□□□□□ -0.62
LIG1-211ENST00000596457 NIPAL4Q0D2K0 466 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 ELP6Q0PNE2 266 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 TRAF2Q12933 501 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 GRIK2Q13002 908 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 ZNF284Q2VY69 593 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 SLC45A4Q5BKX6 768 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 SEL1L2Q5TEA6 688 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 STPG1Q5TH74 334 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 DENND2CQ68D51 928 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 NAPEPLDQ6IQ20 393 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 KIAA1161Q6NSJ0 714 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 NEK5Q6P3R8 708 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 BRAT1Q6PJG6 821 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 BBS12Q6ZW61 710 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 C1orf216Q8TAB5 229 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 HCAR2Q8TDS4 363 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 OLFM3Q96PB7 478 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 ORAI3Q9BRQ5 295 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 BRD8Q9H0E9 1235 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 KCNF1Q9H3M0 494 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 CAPN10Q9HC96 672 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 TMEM9BQ9NQ34 198 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 TRMT1Q9NXH9 659 aaKnown RBP11.17□□□□□ -0.62
LIG1-211ENST00000596457 ATP8A1Q9Y2Q0 1164 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 PCDHB9Q9Y5E1 797 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 RAI2Q9Y5P3 530 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 ZFYVE26Q68DK2 2539 aa11.17□□□□□ -0.62
LIG1-211ENST00000596457 TRPM6Q9BX84 2022 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 GCN1Q92616 2671 aaKnown RBP11.16□□□□□ -0.62
LIG1-211ENST00000596457 DCDC2BA2VCK2 349 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 GOLGA6L9A6NEM1 432 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 PRAMEF26H0Y7S4 382 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 APOC4-APOC2K7ER74 178 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 TRAFD1O14545 582 aaPredicted RBP11.16□□□□□ -0.62
LIG1-211ENST00000596457 RIOK3O14730 519 aaKnown RBP11.16□□□□□ -0.62
LIG1-211ENST00000596457 TM4SF5O14894 197 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 SPINT1O43278 529 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 LATO43561 262 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 LZTS3O60299 673 aaPredicted RBP11.16□□□□□ -0.62
LIG1-211ENST00000596457 TM7SF2O76062 418 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 TJP3O95049 919 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 APOC2P02655 101 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 WNT1P04628 370 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 HNRNPA2B1P22626 353 aaKnown RBP11.16□□□□□ -0.62
LIG1-211ENST00000596457 AKT2P31751 481 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 CD86P42081 329 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 PI4KAP42356 2102 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 EPHB1P54762 984 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 EIF3EP60228 445 aaKnown RBP11.16□□□□□ -0.62
LIG1-211ENST00000596457 IFI35P80217 286 aaPredicted RBP11.16□□□□□ -0.62
LIG1-211ENST00000596457 RPS6KA1Q15418 735 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 TMEM52BQ4KMG9 183 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 PRAMEF14Q5SWL7 426 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 ARMC12Q5T9G4 340 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 MEI1Q5TIA1 1274 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 DARS2Q6PI48 645 aaKnown RBP11.16□□□□□ -0.62
LIG1-211ENST00000596457 KDELC2Q7Z4H8 507 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 MINDY1Q8N5J2 469 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 ACTL9Q8TC94 416 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 FATE1Q969F0 183 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 SKA1Q96BD8 255 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 HES6Q96HZ4 224 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 RBM15Q96T37 977 aaKnown RBP eCLIP11.16□□□□□ -0.62
LIG1-211ENST00000596457 IL12RB2Q99665 862 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 GAREM1Q9H706 876 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 TPX2Q9ULW0 747 aaKnown RBP11.16□□□□□ -0.62
LIG1-211ENST00000596457 DMTF1Q9Y222 760 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 CHKBQ9Y259 395 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 ANKRD6Q9Y2G4 727 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 SNX11Q9Y5W9 270 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 PCDH15Q96QU1 1955 aa11.16□□□□□ -0.62
LIG1-211ENST00000596457 TSPAN11A1L157 253 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 H0Y8X5 98 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 CDX4O14627 284 aaPredicted RBP11.15□□□□□ -0.62
LIG1-211ENST00000596457 AREL1O15033 823 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 OPHN1O60890 802 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 SOCS5O75159 536 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 PDHA1P08559 390 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 CES1P23141 567 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 PTPN3P26045 913 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms