RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 PCDH12Q9NPG4 1184 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 NOCTQ9UK39 431 aaKnown RBP10.06□□□□□ -0.8
LIG1-209ENST00000596104 APPL1Q9UKG1 709 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 LOXL2Q9Y4K0 774 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 OR1A2Q9Y585 309 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 PCDHGA4Q9Y5G9 962 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 HEMK1Q9Y5R4 338 aaPredicted RBP10.06□□□□□ -0.8
LIG1-209ENST00000596104 DGKBQ9Y6T7 804 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 TLN1Q9Y490 2541 aaKnown RBP10.05□□□□□ -0.8
LIG1-209ENST00000596104 PRAMEF33A0A0G2JMD5 474 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 SUV39H1O43463 412 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 PRAMEF10O60809 474 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 PIGNO95427 931 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 FAM87AP0C7U9 286 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 JMJD7P0C870 316 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 GLB1P16278 677 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 CHRNB2P17787 502 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 MMP12P39900 470 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 YBEYP58557 167 aaPredicted RBP10.05□□□□□ -0.8
LIG1-209ENST00000596104 RHOAP61586 193 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 PTP4A2Q12974 167 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 MTM1Q13496 603 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 CYTH1Q15438 398 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 CAMK4Q16566 473 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 UGP2Q16851 508 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 KIF26BQ2KJY2 2108 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 CERCAMQ5T4B2 595 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 RD3Q7Z3Z2 195 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 TMPRSS9Q7Z410 1059 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 SPRED1Q7Z699 444 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 PHLDB2Q86SQ0 1253 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 VASH2Q86V25 355 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 ZSWIM9Q86XI8 627 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 DTX1Q86Y01 620 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 SLITRK4Q8IW52 837 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 SFTPA2Q8IWL1 248 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 PYROXD2Q8N2H3 581 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 MLKLQ8NB16 471 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 HCAR2Q8TDS4 363 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 FAM172AQ8WUF8 416 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 HTR3CQ8WXA8 447 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 OR1E3Q8WZA6 343 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 TMEM159Q96B96 161 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 HMCESQ96FZ2 354 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 EXOC2Q96KP1 924 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 WDR92Q96MX6 357 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 SEMA3CQ99985 751 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 TUBGCP2Q9BSJ2 902 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 STK33Q9BYT3 514 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 SUV39H2Q9H5I1 410 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 WDR70Q9NW82 654 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 FOXJ2Q9P0K8 574 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 KLQ9UEF7 1012 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 DOCK4Q8N1I0 1966 aa10.05□□□□□ -0.8
LIG1-209ENST00000596104 TMEM202A6NGA9 273 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 WASH4PA8MWX3 477 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 C9orf172C9J069 976 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 RASA4BC9J798 803 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 RASA4O43374 803 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 TNFP01375 233 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 PCCBP05166 539 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 PRKCSHP14314 528 aaPredicted RBP10.04□□□□□ -0.8
LIG1-209ENST00000596104 PNLIPP16233 465 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 XPAP23025 273 aaPredicted RBP10.04□□□□□ -0.8
LIG1-209ENST00000596104 EPHB2P29323 1055 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 LIG3P49916 1009 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 GSCP56915 257 aaPredicted RBP10.04□□□□□ -0.8
LIG1-209ENST00000596104 FMO1Q01740 532 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 SRSF1Q07955 248 aaKnown RBP eCLIP10.04□□□□□ -0.81e-6■■■■□ 20.3
LIG1-209ENST00000596104 SERINC3Q13530 473 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 HLTFQ14527 1009 aaKnown RBP eCLIP10.04□□□□□ -0.8
LIG1-209ENST00000596104 TBR1Q16650 682 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 MANEAQ5SRI9 462 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 ATG14Q6ZNE5 492 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 ZFAND4Q86XD8 727 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 ZNF677Q86XU0 584 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 FAM114A1Q8IWE2 563 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 Q8N9G6 341 aaPredicted RBP10.04□□□□□ -0.8
LIG1-209ENST00000596104 PLA2G15Q8NCC3 412 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 ATL2Q8NHH9 583 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 SLC30A5Q8TAD4 765 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 USP7Q93009 1102 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 C11orf70Q9BRQ4 267 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 ARHGAP9Q9BRR9 750 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 PDFQ9HBH1 243 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 FGF22Q9HCT0 170 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 DAAM1Q9Y4D1 1078 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 RNF215Q9Y6U7 377 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 UBR5O95071 2799 aaPredicted RBP10.04□□□□□ -0.8
LIG1-209ENST00000596104 PTPN13Q12923 2485 aa10.04□□□□□ -0.8
LIG1-209ENST00000596104 A0A1W2PQC6 194 aa10.03□□□□□ -0.8
LIG1-209ENST00000596104 CFAP69A5D8W1 941 aa10.03□□□□□ -0.8
LIG1-209ENST00000596104 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.03□□□□□ -0.8
LIG1-209ENST00000596104 AGRPO00253 132 aa10.03□□□□□ -0.8
LIG1-209ENST00000596104 BUB1BO60566 1050 aaPredicted RBP10.03□□□□□ -0.8
LIG1-209ENST00000596104 PRKCGP05129 697 aa10.03□□□□□ -0.8
LIG1-209ENST00000596104 SFTPCP11686 197 aa10.03□□□□□ -0.8
LIG1-209ENST00000596104 RFC1P35251 1148 aaPredicted RBP10.03□□□□□ -0.8
LIG1-209ENST00000596104 KIAA1024LP59773 190 aa10.03□□□□□ -0.8
LIG1-209ENST00000596104 CDR2Q01850 454 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms