RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ZNF641Q96N77 438 aaPredicted RBP20.64■□□□□ 0.89
SHMT1-209ENST00000582653 BOCQ9BWV1 1114 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 ZWILCHQ9H900 591 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 SP110Q9HB58 689 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 RAI2Q9Y5P3 530 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 IGSF10Q6WRI0 2623 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 A0A1W2PQJ5 194 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 TSPAN11A1L157 253 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 CPED1A4D0V7 1026 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 TMEM110-MUSTN1A8MSY1 372 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 LMO7DNF2Z398 122 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 MUSKO15146 869 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 CSO75390 466 aaKnown RBP20.63■□□□□ 0.89
SHMT1-209ENST00000582653 DXOO77932 396 aaKnown RBP20.63■□□□□ 0.89
SHMT1-209ENST00000582653 TGM2P21980 687 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 AMPD1P23109 780 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 PCK1P35558 622 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 HCAR3P49019 387 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 ADKP55263 362 aaKnown RBP20.63■□□□□ 0.89
SHMT1-209ENST00000582653 C1orf61Q13536 156 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 DPYSQ14117 519 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 IRF4Q15306 451 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 PRRT3Q5FWE3 981 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 CFAP58Q5T655 872 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 FAXCQ5TGI0 409 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 TXNRD3NBQ6F5E7 133 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 HSPH1Q92598 858 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 GLMNQ92990 594 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 GRAMD1AQ96CP6 724 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 NSMCE3Q96MG7 304 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 CINPQ9BW66 212 aaPredicted RBP20.63■□□□□ 0.89
SHMT1-209ENST00000582653 SLC13A1Q9BZW2 595 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 THAP2Q9H0W7 228 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 ETNK2Q9NVF9 386 aa20.63■□□□□ 0.89
SHMT1-209ENST00000582653 APOBEC3BQ9UH17 382 aaKnown RBP20.63■□□□□ 0.89
SHMT1-209ENST00000582653 TTC24A2A3L6 582 aaPredicted RBP20.62■□□□□ 0.89
SHMT1-209ENST00000582653 YY2O15391 372 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 MPOP05164 745 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 CSNK1DP48730 415 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 RPIAP49247 311 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 LIG3P49916 1009 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 BLKP51451 505 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 PPARDQ03181 441 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 IL10RBQ08334 325 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 LRRC14Q15048 493 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 AGERQ15109 404 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 NR0B2Q15466 257 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 ISXQ2M1V0 245 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 WSCD2Q2TBF2 565 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 GUSBP11Q6P575 273 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 MACC1Q6ZN28 852 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 EFL1Q7Z2Z2 1120 aaKnown RBP20.62■□□□□ 0.89
SHMT1-209ENST00000582653 PHACTR4Q8IZ21 702 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 ZNF248Q8NDW4 579 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 TUBGCP5Q96RT8 1024 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 UBL7Q96S82 380 aaPredicted RBP20.62■□□□□ 0.89
SHMT1-209ENST00000582653 POLR1BQ9H9Y6 1135 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 CAPN11Q9UMQ6 739 aa20.62■□□□□ 0.89
SHMT1-209ENST00000582653 BZW2Q9Y6E2 419 aaKnown RBP20.62■□□□□ 0.89
SHMT1-209ENST00000582653 A0A087X0T9 212 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 H3BRJ5 948 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 SERPING1P05155 500 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 FAM228BP0C875 321 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 RARAP10276 462 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 C6P13671 934 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 ERVPABLB-1P60509 514 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 ZBED6P86452 979 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 SLC10A7Q0GE19 358 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 NFKBIBQ15653 356 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 DPYSL2Q16555 572 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 BOLA3Q53S33 107 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 C6orf132Q5T0Z8 1188 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 BRAT1Q6PJG6 821 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 NYAP1Q6ZVC0 841 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 POLNQ7Z5Q5 900 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 SYN2Q92777 582 aaPredicted RBP20.61■□□□□ 0.89
SHMT1-209ENST00000582653 LRRC61Q9BV99 259 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 CLPBQ9H078 707 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 ATP13A3Q9H7F0 1226 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.61■□□□□ 0.89
SHMT1-209ENST00000582653 IFNKQ9P0W0 207 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 ATP8A1Q9Y2Q0 1164 aa20.61■□□□□ 0.89
SHMT1-209ENST00000582653 CFAP69A5D8W1 941 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 EIF4E1BA6NMX2 242 aaKnown RBP20.6■□□□□ 0.89
SHMT1-209ENST00000582653 GOLGA6L19H0YKK7 550 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 ANXA6P08133 673 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 TSHRP16473 764 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 SERPINA4P29622 427 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 SCNN1BP51168 640 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 ZNF135P52742 658 aaPredicted RBP20.6■□□□□ 0.89
SHMT1-209ENST00000582653 GABREP78334 506 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 TLE3Q04726 772 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 BCL2L1Q07817 233 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 NSUN2Q08J23 767 aaKnown RBP eCLIP20.6■□□□□ 0.89
SHMT1-209ENST00000582653 CCDC173Q0VFZ6 552 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 PIGHQ14442 188 aaPredicted RBP20.6■□□□□ 0.89
SHMT1-209ENST00000582653 RFTN1Q14699 578 aaPredicted RBP20.6■□□□□ 0.89
SHMT1-209ENST00000582653 ERAP2Q6P179 960 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 LVRNQ6Q4G3 990 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 SDR16C5Q8N3Y7 309 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms