RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 SUOXP51687 545 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 CFAP58Q5T655 872 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 TIGD7Q6NT04 549 aaPredicted RBP20.26■□□□□ 0.83
SS18-218ENST00000581021 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.26■□□□□ 0.83
SS18-218ENST00000581021 CNTD1Q8N815 330 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 CCNYQ8ND76 341 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 ARRDC2Q8TBH0 407 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 NSMCE1Q8WV22 266 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 ASB12Q8WXK4 309 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 ALG3Q92685 438 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 CENPTQ96BT3 561 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 SMIM14Q96QK8 99 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 CEP41Q9BYV8 373 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 GDF3Q9NR23 364 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.25■□□□□ 0.83
SS18-218ENST00000581021 SPAARA0A1B0GVQ0 90 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 CST8O60676 142 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 SOCS5O75159 536 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 C6P13671 934 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 GM2AP17900 193 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 XPAP23025 273 aaPredicted RBP20.25■□□□□ 0.83
SS18-218ENST00000581021 CCT8P50990 548 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 GSDMDP57764 484 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 IFI35P80217 286 aaPredicted RBP20.25■□□□□ 0.83
SS18-218ENST00000581021 OVGP1Q12889 678 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 SLC45A4Q5BKX6 768 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 N4BP2L1Q5TBK1 243 aaPredicted RBP20.25■□□□□ 0.83
SS18-218ENST00000581021 KAZNQ674X7 775 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 KYAT3Q6YP21 454 aaKnown RBP20.25■□□□□ 0.83
SS18-218ENST00000581021 BBS5Q8N3I7 341 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 TP53I13Q8NBR0 393 aaPredicted RBP20.25■□□□□ 0.83
SS18-218ENST00000581021 EXD1Q8NHP7 514 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 CXorf40AQ8TE69 158 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 KLHDC7BQ96G42 594 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 LENG8Q96PV6 779 aaPredicted RBP20.25■□□□□ 0.83
SS18-218ENST00000581021 IL12RB2Q99665 862 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 MAK16Q9BXY0 300 aaKnown RBP20.25■□□□□ 0.83
SS18-218ENST00000581021 POLR1EQ9GZS1 481 aaKnown RBP20.25■□□□□ 0.83
SS18-218ENST00000581021 MBNL1Q9NR56 388 aaKnown RBP20.25■□□□□ 0.83
SS18-218ENST00000581021 PCDHGB2Q9Y5G2 931 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 ADGRG1Q9Y653 693 aa20.25■□□□□ 0.83
SS18-218ENST00000581021 PCNX2A6NKB5 2137 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 A8MX80 341 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 PCDHGA12O60330 932 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 PGLSO95336 258 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 JCHAINP01591 159 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 MMP2P08253 660 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 PDHA1P08559 390 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 CEACAM1P13688 526 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 CTNNA2P26232 953 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 LIG3P49916 1009 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 PEX5P50542 639 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 NAP1L1P55209 391 aaKnown RBP20.24■□□□□ 0.83
SS18-218ENST00000581021 ELP6Q0PNE2 266 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 SGCGQ13326 291 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 TFDP3Q5H9I0 405 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 RALGPS1Q5JS13 557 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 AADACL2Q6P093 401 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 ERAP2Q6P179 960 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 Q6ZSR6 202 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 DPPA4Q7L190 304 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 KANSL1Q7Z3B3 1105 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 PTAR1Q7Z6K3 402 aaPredicted RBP20.24■□□□□ 0.83
SS18-218ENST00000581021 NT5DC3Q86UY8 548 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 ZSCAN30Q86W11 494 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 GATAD2AQ86YP4 633 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 RCOR2Q8IZ40 523 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 BAHD1Q8TBE0 780 aaPredicted RBP20.24■□□□□ 0.83
SS18-218ENST00000581021 SAP25Q8TEE9 199 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 PDCD6IPQ8WUM4 868 aaKnown RBP20.24■□□□□ 0.83
SS18-218ENST00000581021 SKA1Q96BD8 255 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 ZNF830Q96NB3 372 aaPredicted RBP20.24■□□□□ 0.83
SS18-218ENST00000581021 ERVMER34-1Q9H9K5 563 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 B4GALT6Q9UBX8 382 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 PCOLCE2Q9UKZ9 415 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 TTLL3Q9Y4R7 772 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 PCDHB9Q9Y5E1 797 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 PCDHA3Q9Y5H8 950 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 HS3ST3A1Q9Y663 406 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 CAPN6Q9Y6Q1 641 aa20.24■□□□□ 0.83
SS18-218ENST00000581021 A0A0U1RQS6 177 aa20.23■□□□□ 0.83
SS18-218ENST00000581021 A6NNZ2 444 aa20.23■□□□□ 0.83
SS18-218ENST00000581021 FZD6O60353 706 aa20.23■□□□□ 0.83
SS18-218ENST00000581021 TM7SF2O76062 418 aa20.23■□□□□ 0.83
SS18-218ENST00000581021 ZRANB2O95218 330 aaKnown RBP eCLIP20.23■□□□□ 0.83
SS18-218ENST00000581021 CPP00450 1065 aa20.23■□□□□ 0.83
SS18-218ENST00000581021 ZFXP17010 805 aaPredicted RBP20.23■□□□□ 0.83
SS18-218ENST00000581021 EPHA8P29322 1005 aaPredicted RBP20.23■□□□□ 0.83
SS18-218ENST00000581021 PFN3P60673 137 aa20.23■□□□□ 0.83
SS18-218ENST00000581021 AP1B1Q10567 949 aa20.23■□□□□ 0.83
SS18-218ENST00000581021 PDK1Q15118 436 aa20.23■□□□□ 0.83
SS18-218ENST00000581021 PRKD1Q15139 912 aaPredicted RBP20.23■□□□□ 0.83
SS18-218ENST00000581021 IRF4Q15306 451 aa20.23■□□□□ 0.83
SS18-218ENST00000581021 ODF2Q5BJF6 829 aa20.23■□□□□ 0.83
SS18-218ENST00000581021 DENND6BQ8NEG7 585 aa20.23■□□□□ 0.83
SS18-218ENST00000581021 KIAA1524Q8TCG1 905 aa20.23■□□□□ 0.83
SS18-218ENST00000581021 HAUS1Q96CS2 278 aa20.23■□□□□ 0.83
SS18-218ENST00000581021 HEMGNQ9BXL5 484 aa20.23■□□□□ 0.83
SS18-218ENST00000581021 RAI2Q9Y5P3 530 aa20.23■□□□□ 0.83
SS18-218ENST00000581021 GOLGA6L6A8MZA4 724 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms