RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 FAM129BQ96TA1 746 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 SLC2A4RGQ9NR83 387 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 ARL5AQ9Y689 179 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 A8MX80 341 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 CCL22O00626 93 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 C1QAP02745 245 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 EPHX1P07099 455 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 F7P08709 466 aaPredicted RBP25.26■■□□□ 1.63
SHMT1-207ENST00000580002 PCID2Q5JVF3 399 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 ESRP1Q6NXG1 681 aaKnown RBP25.26■■□□□ 1.63
SHMT1-207ENST00000580002 GDPD4Q6W3E5 623 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 TPRG1Q6ZUI0 275 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 CHPFQ8IZ52 775 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 KIFC1Q9BW19 673 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 PRSS16Q9NQE7 514 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 SMYD2Q9NRG4 433 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 SLC17A6Q9P2U8 582 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 RABGEF1Q9UJ41 708 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 SOX13Q9UN79 622 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 SLC8A2Q9UPR5 921 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 ARIH1Q9Y4X5 557 aaPredicted RBP25.26■■□□□ 1.63
SHMT1-207ENST00000580002 RPS6KL1Q9Y6S9 549 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 TCRBV9S1A1TA0A576 114 aa25.25■■□□□ 1.63
SHMT1-207ENST00000580002 HNRNPLP14866 589 aaKnown RBP eCLIP25.25■■□□□ 1.63
SHMT1-207ENST00000580002 PGAM1P18669 254 aa25.25■■□□□ 1.63
SHMT1-207ENST00000580002 SERPINA4P29622 427 aa25.25■■□□□ 1.63
SHMT1-207ENST00000580002 ANKRD20A4Q4UJ75 823 aa25.25■■□□□ 1.63
SHMT1-207ENST00000580002 PKN3Q6P5Z2 889 aa25.25■■□□□ 1.63
SHMT1-207ENST00000580002 ZNF669Q96BR6 464 aaPredicted RBP25.25■■□□□ 1.63
SHMT1-207ENST00000580002 MRRFQ96E11 262 aaKnown RBP25.25■■□□□ 1.63
SHMT1-207ENST00000580002 TTC25Q96NG3 672 aa25.25■■□□□ 1.63
SHMT1-207ENST00000580002 SAMD15Q9P1V8 674 aa25.25■■□□□ 1.63
SHMT1-207ENST00000580002 IL36AQ9UHA7 158 aa25.25■■□□□ 1.63
SHMT1-207ENST00000580002 CA14Q9ULX7 337 aa25.25■■□□□ 1.63
SHMT1-207ENST00000580002 TCAF1Q9Y4C2 921 aa25.25■■□□□ 1.63
SHMT1-207ENST00000580002 EDDM13A0A1B0GTR0 161 aa25.24■■□□□ 1.63
SHMT1-207ENST00000580002 ZCWPW2A0A1B0GU75 182 aa25.24■■□□□ 1.63
SHMT1-207ENST00000580002 MAPK8P45983 427 aa25.24■■□□□ 1.63
SHMT1-207ENST00000580002 CRYMQ14894 314 aa25.24■■□□□ 1.63
SHMT1-207ENST00000580002 PREPLQ4J6C6 727 aaPredicted RBP25.24■■□□□ 1.63
SHMT1-207ENST00000580002 SPDYCQ5MJ68 293 aa25.24■■□□□ 1.63
SHMT1-207ENST00000580002 STEAP4Q687X5 459 aa25.24■■□□□ 1.63
SHMT1-207ENST00000580002 TMEM135Q86UB9 458 aa25.24■■□□□ 1.63
SHMT1-207ENST00000580002 KDM1BQ8NB78 822 aa25.24■■□□□ 1.63
SHMT1-207ENST00000580002 ECHDC3Q96DC8 303 aa25.24■■□□□ 1.63
SHMT1-207ENST00000580002 TUBGCP5Q96RT8 1024 aa25.24■■□□□ 1.63
SHMT1-207ENST00000580002 THEGQ9P2T0 379 aa25.24■■□□□ 1.63
SHMT1-207ENST00000580002 CXorf49A8MYA2 514 aaPredicted RBP25.23■■□□□ 1.63
SHMT1-207ENST00000580002 PLK4O00444 970 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 LDB2O43679 373 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 SOCS5O75159 536 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 EPHB1P54762 984 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 PFKPQ01813 784 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 ZNF844Q08AG5 666 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 ENPP2Q13822 863 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 PAF1Q8N7H5 531 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 FAM3CQ92520 227 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 ADGRE3Q9BY15 652 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 DUSP12Q9UNI6 340 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 BPTFQ12830 3046 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 FAM237BA0A1B0GVD1 139 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 SMIM23A6NLE4 172 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 GOLGA8KD6RF30 607 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 GOLGA8TH3BQL2 631 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 SLC4A1P02730 911 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 NUDT17P0C025 328 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 ALADP13716 330 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 ADRA1DP25100 572 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 SLCO1A2P46721 670 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 RAD51Q06609 339 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 LONRF1Q17RB8 773 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 KIAA1211LQ6NV74 962 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 NUDT18Q6ZVK8 323 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 PNPLA1Q8N8W4 532 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 IL17RCQ8NAC3 791 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 EPS8L3Q8TE67 593 aaKnown RBP25.23■■□□□ 1.63
SHMT1-207ENST00000580002 EID2BQ96D98 161 aa25.23■■□□□ 1.63
SHMT1-207ENST00000580002 NDRG2Q9UN36 371 aaKnown RBP25.23■■□□□ 1.63
SHMT1-207ENST00000580002 AP3B1O00203 1094 aa25.22■■□□□ 1.63
SHMT1-207ENST00000580002 ADAM23O75077 832 aa25.22■■□□□ 1.63
SHMT1-207ENST00000580002 GCAP28676 217 aa25.22■■□□□ 1.63
SHMT1-207ENST00000580002 HNF1BP35680 557 aa25.22■■□□□ 1.63
SHMT1-207ENST00000580002 TMPRSS15P98073 1019 aa25.22■■□□□ 1.63
SHMT1-207ENST00000580002 GRSF1Q12849 480 aaKnown RBP eCLIP25.22■■□□□ 1.63
SHMT1-207ENST00000580002 CNGA3Q16281 694 aa25.22■■□□□ 1.63
SHMT1-207ENST00000580002 SUGP1Q8IWZ8 645 aaKnown RBP25.22■■□□□ 1.63
SHMT1-207ENST00000580002 PPHLN1Q8NEY8 458 aaKnown RBP25.22■■□□□ 1.63
SHMT1-207ENST00000580002 OR13C4Q8NGS5 318 aa25.22■■□□□ 1.63
SHMT1-207ENST00000580002 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP25.22■■□□□ 1.63
SHMT1-207ENST00000580002 A0A087WUV0 522 aaPredicted RBP25.21■■□□□ 1.63
SHMT1-207ENST00000580002 MROH6A6NGR9 719 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 UGT1A9O60656 530 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 ABHD2P08910 425 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 ERVK-10P10266 1014 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 ARSDP51689 593 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 ALS2CLQ60I27 953 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 CACUL1Q86Y37 369 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 GSDMBQ8TAX9 411 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 ZNF641Q96N77 438 aaPredicted RBP25.21■■□□□ 1.63
SHMT1-207ENST00000580002 VIPAS39Q9H9C1 493 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms