RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 MBD1Q9UIS9 605 aaPredicted RBP8.63□□□□□ -1.03
NUP88-211ENST00000575976 FZD4Q9ULV1 537 aa8.63□□□□□ -1.03
NUP88-211ENST00000575976 NEU2Q9Y3R4 380 aa8.63□□□□□ -1.03
NUP88-211ENST00000575976 MRFAP1Q9Y605 127 aa8.63□□□□□ -1.03
NUP88-211ENST00000575976 CACNA1IQ9P0X4 2223 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 LOC285095A0A1B0GVY8 99 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 A0A1W2PQ67 120 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 FAM47DPA6NHR8 397 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 UPK3BL1B0FP48 263 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 UPK3BL2E5RIL1 263 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 SLC7A4O43246 635 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 SPINT1O43278 529 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 PLRG1O43660 514 aaKnown RBP8.62□□□□□ -1.03
NUP88-211ENST00000575976 LILRB5O75023 590 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 ABCB7O75027 752 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 ANXA9O76027 345 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 ECEL1O95672 775 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 CTPS1P17812 591 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 CA4P22748 312 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 XPAP23025 273 aaPredicted RBP8.62□□□□□ -1.03
NUP88-211ENST00000575976 VPS41P49754 854 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 ADPRHP54922 357 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 POLR2LP62875 67 aaKnown RBP8.62□□□□□ -1.03
NUP88-211ENST00000575976 SEMG2Q02383 582 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 CDK18Q07002 472 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 CCDC15Q0P6D6 951 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 MPP3Q13368 585 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 OLIG2Q13516 323 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 GALNT3Q14435 633 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 SPARCL1Q14515 664 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 BRAT1Q6PJG6 821 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 ZNF572Q7Z3I7 529 aaPredicted RBP8.62□□□□□ -1.03
NUP88-211ENST00000575976 DEFB119Q8N690 84 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 LPCAT1Q8NF37 534 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 IPMKQ8NFU5 416 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 GRK7Q8WTQ7 553 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 GAB3Q8WWW8 586 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 IFT43Q96FT9 208 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 SPACA7Q96KW9 195 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 MRGPRX2Q96LB1 330 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 CNTNAP3BQ96NU0 1288 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 SMIM14Q96QK8 99 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 FICDQ9BVA6 458 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 GPR174Q9BXC1 333 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 CNTNAP3Q9BZ76 1288 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 SGK2Q9HBY8 427 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 PCDH12Q9NPG4 1184 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 RAB6BQ9NRW1 208 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 VPS45Q9NRW7 570 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 PCYOX1Q9UHG3 505 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 FEZ2Q9UHY8 353 aaPredicted RBP8.62□□□□□ -1.03
NUP88-211ENST00000575976 GGT7Q9UJ14 662 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 PHTF1Q9UMS5 762 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 ITM2BQ9Y287 266 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 AAR2Q9Y312 384 aaKnown RBP8.62□□□□□ -1.03
NUP88-211ENST00000575976 FADS3Q9Y5Q0 445 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 R4GN57 208 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 CFAP47Q6ZTR5 3102 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 WDR87Q6ZQQ6 2873 aa8.62□□□□□ -1.03
NUP88-211ENST00000575976 TBC1D3DA0A087WVF3 549 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 TBC1D3IA0A087WXS9 549 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 TBC1D3EA0A087X179 549 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 TBC1D3KA0A087X1G2 549 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 A0A0J9YYE9 177 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 TBC1D3FA6NER0 549 aaPredicted RBP8.61□□□□□ -1.03
NUP88-211ENST00000575976 A8MX80 341 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 TBC1D3LB9A6J9 549 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 RIOK3O14730 519 aaKnown RBP8.61□□□□□ -1.03
NUP88-211ENST00000575976 AREL1O15033 823 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 TTI1O43156 1089 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 PSMD3O43242 534 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 MAP3K13O43283 966 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 AP1G1O43747 822 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 NDUFS2O75306 463 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 USP12O75317 370 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 RPP40O75818 363 aaKnown RBP8.61□□□□□ -1.03
NUP88-211ENST00000575976 SEMA4FO95754 770 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 NDST3O95803 873 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 GAS8O95995 478 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 AGTP01019 485 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 EPOP01588 193 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 TRBC1P01850 177 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 ALPIP09923 528 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 ATXN1LP0C7T5 689 aaKnown RBP8.61□□□□□ -1.03
NUP88-211ENST00000575976 TBC1D3HP0C7X1 549 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 SDHBP21912 280 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 CNR2P34972 360 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 ADRA1AP35348 466 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 FDFT1P37268 417 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 CHRNA4P43681 627 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 TERF1P54274 439 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 EPHB1P54762 984 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 FAM193AP78312 1265 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 MRPS25P82663 173 aaKnown RBP8.61□□□□□ -1.03
NUP88-211ENST00000575976 RALGDSQ12967 914 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 GPS1Q13098 491 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 SEMA5AQ13591 1074 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 PPP1R7Q15435 360 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 QPCTQ16769 361 aa8.61□□□□□ -1.03
NUP88-211ENST00000575976 DNTTIP2Q5QJE6 756 aaKnown RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms