RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 GPR149Q86SP6 731 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 SRLQ86TD4 932 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 KCNMB4Q86W47 210 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 BPHLQ86WA6 291 aaPredicted RBP8.03□□□□□ -1.12
VPS39-213ENST00000570062 RASSF3Q86WH2 238 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 CIR1Q86X95 450 aaPredicted RBP8.03□□□□□ -1.12
VPS39-213ENST00000570062 ARID3BQ8IVW6 561 aaPredicted RBP8.03□□□□□ -1.12
VPS39-213ENST00000570062 PARP9Q8IXQ6 854 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 ADGRG2Q8IZP9 1017 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 AGGF1Q8N302 714 aaeCLIP8.03□□□□□ -1.12
VPS39-213ENST00000570062 MPP5Q8N3R9 675 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 PCDH20Q8N6Y1 951 aaKnown RBP8.03□□□□□ -1.12
VPS39-213ENST00000570062 BANPQ8N9N5 519 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 RAB3IL1Q8TBN0 382 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 BPIFB1Q8TDL5 484 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 BCAS4Q8TDM0 211 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 HCAR2Q8TDS4 363 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 ATXN2LQ8WWM7 1075 aaKnown RBP8.03□□□□□ -1.12
VPS39-213ENST00000570062 PTPRN2Q92932 1015 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 ZNF707Q96C28 371 aaPredicted RBP8.03□□□□□ -1.12
VPS39-213ENST00000570062 TIFAQ96CG3 184 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 ALG14Q96F25 216 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 TSPAN17Q96FV3 270 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 CHMP6Q96FZ7 201 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 APOPT1Q96IL0 206 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 LRIG1Q96JA1 1093 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 MAGEB18Q96M61 343 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 RIPOR3Q96MK2 946 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 ZNF641Q96N77 438 aaPredicted RBP8.03□□□□□ -1.12
VPS39-213ENST00000570062 GORASP1Q9BQQ3 440 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 BBS2Q9BXC9 721 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 FAM107BQ9H098 131 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 ATP13A3Q9H7F0 1226 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 UBP1Q9NZI7 540 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.03□□□□□ -1.12
VPS39-213ENST00000570062 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.03□□□□□ -1.12
VPS39-213ENST00000570062 VPS51Q9UID3 782 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 GGA2Q9UJY4 613 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 TLK1Q9UKI8 766 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 HS3ST2Q9Y278 367 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 ANKRD6Q9Y2G4 727 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 CCDC189A1A4V9 331 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 GRXCR1A8MXD5 290 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 ANKRD66B4E2M5 251 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 SOX1O00570 391 aaPredicted RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 NDUFAB1O14561 156 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 PER2O15055 1255 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 TYROBPO43914 113 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 GLRA3O75311 464 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 USP12O75317 370 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 SNUPNO95149 360 aaKnown RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 POP4O95707 220 aaKnown RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 GSRP00390 522 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 C1QAP02745 245 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 ITGA2BP08514 1039 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 VSIG8P0DPA2 414 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 MYOGP15173 224 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 TPH1P17752 444 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 POLR2EP19388 210 aaKnown RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 SERPINA4P29622 427 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 SLC26A3P40879 764 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 CCR2P41597 374 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 LIMK2P53671 638 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 PRKAA2P54646 552 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 EPHB1P54762 984 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 GYS2P54840 703 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 SLC12A2P55011 1212 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 MAXP61244 160 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 ZXDBP98169 803 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 ACVR1Q04771 509 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 BCL2L1Q07817 233 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 POU6F1Q14863 301 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 EIF4HQ15056 248 aaKnown RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 TAF1AQ15573 450 aaPredicted RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 PCSK7Q16549 785 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 KCTD19Q17RG1 926 aaPredicted RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 CCDC153Q494R4 210 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 HSP90AA5PQ58FG0 334 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 C4orf48Q5BLP8 95 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 AARS2Q5JTZ9 985 aaKnown RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 SIRPB2Q5JXA9 342 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 ARMC12Q5T9G4 340 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 RNF187Q5TA31 235 aaPredicted RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 GKAP1Q5VSY0 366 aaPredicted RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 LYPLAL1Q5VWZ2 237 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 NEPROQ6NW34 567 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 STRA8Q7Z7C7 330 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 KIAA0907Q7Z7F0 614 aaPredicted RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 TAX1BP1Q86VP1 789 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 HOMEZQ8IX15 550 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 RAVER1Q8IY67 606 aaKnown RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 TDHQ8IZJ6 230 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 PGBD5Q8N414 524 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 ANKS4BQ8N8V4 417 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 GPR150Q8NGU9 434 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 MZB1Q8WU39 189 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 OSCP1Q8WVF1 389 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 CKAP2Q8WWK9 683 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 ISL2Q96A47 359 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms